dxR is an R extension containing API wrapper functions for interacting with the new DNAnexus platform.

Help topics

• addRow(addRow,DXGTable-method)
  Add a Row to a GTable
• addRows(addRows,DXGTable-method)
  Add Rows to a GTable
• appAddCategories
  appAddCategories API wrapper
• appAddDevelopers
  appAddDevelopers API wrapper
• appAddTags
  appAddTags API wrapper
• appDelete
  appDelete API wrapper
• appDescribe
  appDescribe API wrapper
• appGet
  appGet API wrapper
• appInstall
  appInstall API wrapper
• appletAddTags
  appletAddTags API wrapper
• appletDescribe
  appletDescribe API wrapper
• appletGet
  appletGet API wrapper
• appletGetDetails
  appletGetDetails API wrapper
• appletListProjects
  appletListProjects API wrapper
• appletNew
  appletNew API wrapper
• appletRemoveTags
  appletRemoveTags API wrapper
• appletRename
  appletRename API wrapper
• appletRun
  appletRun API wrapper
• appletSetProperties
  appletSetProperties API wrapper
• appListCategories
  appListCategories API wrapper
• appListDevelopers
  appListDevelopers API wrapper
• appNew
  appNew API wrapper
• appPublish
  appPublish API wrapper
• appRemoveCategories
  appRemoveCategories API wrapper
• appRemoveDevelopers
  appRemoveDevelopers API wrapper
• appRemoveTags
  appRemoveTags API wrapper
• appRun
  appRun API wrapper
• appUninstall
  appUninstall API wrapper
• appUpdate
  appUpdate API wrapper
• closeObj(closeObj,DXGTable-method)
  Close a GTable
• colDesc
  Create a GTable column descriptor
• containerClone
  containerClone API wrapper
• containerDescribe
  containerDescribe API wrapper
• containerDestroy
  containerDestroy API wrapper
• containerListFolder
  containerListFolder API wrapper
• containerMove
  containerMove API wrapper
• containerNewFolder
  containerNewFolder API wrapper
• containerRemoveFolder
  containerRemoveFolder API wrapper
• containerRemoveObjects
  containerRemoveObjects API wrapper
• containerRenameFolder
  containerRenameFolder API wrapper
• desc(desc,DXGTable-method)
  Get the cached describe from a DNAnexus handler
• desc<-(desc<-,DXGTable-method)
  Set the cached description for the data object
• describe(describe,DXGTable-method)
  Describe the Data Object
• dim(dim,DXGTable-method)
  Dimensions of a GTable
• DXGTable
  GenomicTable handler constructor
• DXGTable-class
  GenomicTable (GTable) Handler
• dxHTTPRequest
  Make HTTP Request to DNAnexus API Server
• dxR-package(dxR)
  DNAnexus R Client Library
• fileAddTags
  fileAddTags API wrapper
• fileAddTypes
  fileAddTypes API wrapper
• fileClose
  fileClose API wrapper
• fileDescribe
  fileDescribe API wrapper
• fileDownload
  fileDownload API wrapper
• fileGetDetails
  fileGetDetails API wrapper
• fileListProjects
  fileListProjects API wrapper
• fileNew
  fileNew API wrapper
• fileRemoveTags
  fileRemoveTags API wrapper
• fileRemoveTypes
  fileRemoveTypes API wrapper
• fileRename
  fileRename API wrapper
• fileSetDetails
  fileSetDetails API wrapper
• fileSetProperties
  fileSetProperties API wrapper
• fileSetVisibility
  fileSetVisibility API wrapper
• fileUpload
  fileUpload API wrapper
• flushRows(flushRows,DXGTable-method)
  Flush Added Rows to a GTable
• genomicRangeIndex
  Create a genomic range index descriptor
• genomicRangeQuery
  Construct a genomic range query for a GTable with a genomic range index
• getRows(getRows,DXGTable-method)
  Retrieve Rows from a GTable
• gtableAddRows
  gtableAddRows API wrapper
• gtableAddTags
  gtableAddTags API wrapper
• gtableAddTypes
  gtableAddTypes API wrapper
• gtableClose
  gtableClose API wrapper
• gtableDescribe
  gtableDescribe API wrapper
• gtableGet
  gtableGet API wrapper
• gtableGetDetails
  gtableGetDetails API wrapper
• gtableListProjects
  gtableListProjects API wrapper
• gtableNew
  gtableNew API wrapper
• gtableNextPart
  gtableNextPart API wrapper
• gtableRemoveTags
  gtableRemoveTags API wrapper
• gtableRemoveTypes
  gtableRemoveTypes API wrapper
• gtableRename
  gtableRename API wrapper
• gtableSetDetails
  gtableSetDetails API wrapper
• gtableSetProperties
  gtableSetProperties API wrapper
• gtableSetVisibility
  gtableSetVisibility API wrapper
• head(head,DXGTable-method)
  Get the First Part of a GTable
• id(id,DXGTable-method)
  Get the ID from a DNAnexus handler
• jobDescribe
  jobDescribe API wrapper
• jobNew
  jobNew API wrapper
• jobStreamLog
  jobStreamLog API wrapper
• jobTerminate
  jobTerminate API wrapper
• lexicographicIndex
  Create a lexicographic index descriptor
• lexicographicQuery
  Construct a lexicographic query for a GTable with a lexicographic index
• loadFromEnvironment
  (Re)Load DNAnexus Configuration Values
• names(names,DXGTable-method)
  Get Column Names of a GTable
• ncol(ncol,DXGTable-method)
  The Number of Columns in the GTable
• newDXGTable
  Create a new GenomicTable and return a handler
• notificationsGet
  notificationsGet API wrapper
• notificationsMarkRead
  notificationsMarkRead API wrapper
• nrow(nrow,DXGTable-method)
  The Number of Rows in the GTable
• printenv
  Print DNAnexus Configuration Values
• projectAddTags
  projectAddTags API wrapper
• projectClone
  projectClone API wrapper
• projectDecreasePermissions
  projectDecreasePermissions API wrapper
• projectDescribe
  projectDescribe API wrapper
• projectDestroy
  projectDestroy API wrapper
• projectInvite
  projectInvite API wrapper
• projectLeave
  projectLeave API wrapper
• projectListFolder
  projectListFolder API wrapper
• projectMove
  projectMove API wrapper
• projectNew
  projectNew API wrapper
• projectNewFolder
  projectNewFolder API wrapper
• projectRemoveFolder
  projectRemoveFolder API wrapper
• projectRemoveObjects
  projectRemoveObjects API wrapper
• projectRemoveTags
  projectRemoveTags API wrapper
• projectRenameFolder
  projectRenameFolder API wrapper
• projectSetProperties
  projectSetProperties API wrapper
• projectUpdate
  projectUpdate API wrapper
• recordAddTags
  recordAddTags API wrapper
• recordAddTypes
  recordAddTypes API wrapper
• recordClose
  recordClose API wrapper
• recordDescribe
  recordDescribe API wrapper
• recordGetDetails
  recordGetDetails API wrapper
• recordListProjects
  recordListProjects API wrapper
• recordNew
  recordNew API wrapper
• recordRemoveTags
  recordRemoveTags API wrapper
• recordRemoveTypes
  recordRemoveTypes API wrapper
• recordRename
  recordRename API wrapper
• recordSetDetails
  recordSetDetails API wrapper
• recordSetProperties
  recordSetProperties API wrapper
• recordSetVisibility
  recordSetVisibility API wrapper
• systemFindAffiliates
  systemFindAffiliates API wrapper
• systemFindApps
  systemFindApps API wrapper
• systemFindDataObjects
  systemFindDataObjects API wrapper
• systemFindJobs
  systemFindJobs API wrapper
• systemFindProjectMembers
  systemFindProjectMembers API wrapper
• systemFindProjects
  systemFindProjects API wrapper
• systemFindUsers
  systemFindUsers API wrapper
• systemGreet
  systemGreet API wrapper
• systemShortenURL
  systemShortenURL API wrapper
• tail(tail,DXGTable-method)
  Get the Last Part of a GTable
• userDescribe
  userDescribe API wrapper
• userUpdate
  userUpdate API wrapper