Create a genomic range index descriptor

Usage

genomicRangeIndex(chr, lo, hi, name = "gri")

Arguments

chr

Name of the string column of chromosome names to be used

lo

Name of the integer column of low coordinates to be used

hi

Name of the integer column of high coordinates to be used

name

Name to give the created genomic range index; used when querying the GTable after it has been closed.

Examples

genomicRangeIndex("chr", "lo", "hi")
$name
[1] "gri"

$type
[1] "genomic"

$chr
[1] "chr"

$lo
[1] "lo"

$hi
[1] "hi"


genomicRangeIndex("chr", "lo", "hi", name="othergri")
$name
[1] "othergri"

$type
[1] "genomic"

$chr
[1] "chr"

$lo
[1] "lo"

$hi
[1] "hi"

See also