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DNAnexus Python Bindings documentation
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W
_
_new() (dxpy.bindings.dxapplet.DXApplet method)
(dxpy.bindings.dxfile.DXFile method)
A
access (dxpy.bindings.dxapplet.DXApplet attribute)
add_stage() (dxpy.bindings.dxworkflow.DXWorkflow method)
add_tags() (dxpy.bindings.dxanalysis.DXAnalysis method)
(dxpy.bindings.dxapp.DXApp method)
(dxpy.bindings.DXDataObject method)
(dxpy.bindings.dxjob.DXJob method)
add_types() (dxpy.bindings.DXDataObject method)
addTags() (dxpy.bindings.dxapp.DXApp method)
analysis_add_tags() (in module dxpy.api)
analysis_describe() (in module dxpy.api)
analysis_remove_tags() (in module dxpy.api)
analysis_set_properties() (in module dxpy.api)
analysis_terminate() (in module dxpy.api)
APISERVER_HOST (in module dxpy)
APISERVER_PORT (in module dxpy)
APISERVER_PROTOCOL (in module dxpy)
app_add_authorized_users() (in module dxpy.api)
app_add_categories() (in module dxpy.api)
app_add_developers() (in module dxpy.api)
app_add_tags() (in module dxpy.api)
app_delete() (in module dxpy.api)
app_describe() (in module dxpy.api)
app_get() (in module dxpy.api)
app_install() (in module dxpy.api)
app_list_authorized_users() (in module dxpy.api)
app_list_categories() (in module dxpy.api)
app_list_developers() (in module dxpy.api)
app_methodname() (in module dxpy.api)
app_new() (in module dxpy.api)
app_publish() (in module dxpy.api)
app_remove_authorized_users() (in module dxpy.api)
app_remove_categories() (in module dxpy.api)
app_remove_developers() (in module dxpy.api)
app_remove_tags() (in module dxpy.api)
app_run() (in module dxpy.api)
app_uninstall() (in module dxpy.api)
app_update() (in module dxpy.api)
app_validate_batch() (in module dxpy.api)
AppBuilderException
append_underlying_workflow_describe() (in module dxpy)
AppError
AppInternalError
applet_add_tags() (in module dxpy.api)
applet_describe() (in module dxpy.api)
applet_get() (in module dxpy.api)
applet_get_details() (in module dxpy.api)
applet_list_projects() (in module dxpy.api)
applet_new() (in module dxpy.api)
applet_remove_tags() (in module dxpy.api)
applet_rename() (in module dxpy.api)
applet_run() (in module dxpy.api)
applet_set_properties() (in module dxpy.api)
applet_validate_batch() (in module dxpy.api)
archive() (dxpy.bindings.dxfile.DXFile method)
B
BadJSONInReply
build() (in module dxpy.app_builder)
C
classname_methodname() (in module dxpy.api)
clone() (dxpy.bindings.DXDataObject method)
(dxpy.bindings.dxproject.DXContainer method)
close() (dxpy.bindings.DXDataObject method)
(dxpy.bindings.dxfile.DXFile method)
closed() (dxpy.bindings.dxfile.DXFile method)
configure_urllib3() (in module dxpy)
container_clone() (in module dxpy.api)
container_describe() (in module dxpy.api)
container_destroy() (in module dxpy.api)
container_list_folder() (in module dxpy.api)
container_move() (in module dxpy.api)
container_new_folder() (in module dxpy.api)
container_remove_folder() (in module dxpy.api)
container_remove_objects() (in module dxpy.api)
container_rename_folder() (in module dxpy.api)
ContentLengthError
create_app() (in module dxpy.app_builder)
create_app_multi_region() (in module dxpy.app_builder)
created (dxpy.bindings.DXDataObject attribute)
createdBy (dxpy.bindings.DXDataObject attribute)
D
database_add_tags() (in module dxpy.api)
database_add_types() (in module dxpy.api)
database_close() (in module dxpy.api)
database_describe() (in module dxpy.api)
database_download_file() (in module dxpy.api)
database_get_details() (in module dxpy.api)
database_list_folder() (in module dxpy.api)
database_list_projects() (in module dxpy.api)
database_relocate() (in module dxpy.api)
database_remove_tags() (in module dxpy.api)
database_remove_types() (in module dxpy.api)
database_rename() (in module dxpy.api)
database_set_details() (in module dxpy.api)
database_set_properties() (in module dxpy.api)
database_set_visibility() (in module dxpy.api)
dbcluster_add_tags() (in module dxpy.api)
dbcluster_add_types() (in module dxpy.api)
dbcluster_describe() (in module dxpy.api)
dbcluster_get_details() (in module dxpy.api)
dbcluster_new() (in module dxpy.api)
dbcluster_remove_tags() (in module dxpy.api)
dbcluster_remove_types() (in module dxpy.api)
dbcluster_rename() (in module dxpy.api)
dbcluster_set_details() (in module dxpy.api)
dbcluster_set_properties() (in module dxpy.api)
dbcluster_set_visibility() (in module dxpy.api)
dbcluster_start() (in module dxpy.api)
dbcluster_stop() (in module dxpy.api)
dbcluster_terminate() (in module dxpy.api)
decrease_perms() (dxpy.bindings.dxproject.DXProject method)
default() (dxpy.utils.exec_utils.DXJSONEncoder method)
delete() (dxpy.bindings.dxapp.DXApp method)
describe() (dxpy.bindings.dxanalysis.DXAnalysis method)
(dxpy.bindings.dxapp.DXApp method)
(dxpy.bindings.DXDataObject method)
(dxpy.bindings.dxjob.DXJob method)
(dxpy.bindings.DXObject method)
(dxpy.bindings.dxproject.DXContainer method)
(in module dxpy.bindings.dxdataobject_functions)
description (dxpy.bindings.dxapplet.DXApplet attribute)
destroy() (dxpy.bindings.dxproject.DXProject method)
developerNotes (dxpy.bindings.dxapplet.DXApplet attribute)
download_dxfile() (in module dxpy.bindings.dxfile_functions)
download_folder() (in module dxpy.bindings.dxfile_functions)
DXAnalysis (class in dxpy.bindings.dxanalysis)
dxapi (dxpy.bindings.dxapplet.DXApplet attribute)
DXAPIError
DXApp (class in dxpy.bindings.dxapp)
DXApplet (class in dxpy.bindings.dxapplet)
DXAppletError
DXChecksumMismatchError
DXCLIError
DXContainer (class in dxpy.bindings.dxproject)
DXDataObject (class in dxpy.bindings)
DXError
DXExecDependencyError
DXExecDependencyInstaller (class in dxpy.utils.exec_utils)
DXExecutable (class in dxpy.bindings.dxapplet)
DXFile (class in dxpy.bindings.dxfile)
DXFileError
DXHTTPOAuth2 (class in dxpy)
DXHTTPRequest() (in module dxpy)
DXIncompleteReadsError
DXJob (class in dxpy.bindings.dxjob)
DXJobFailureError
DXJSONEncoder (class in dxpy.utils.exec_utils)
dxlink() (in module dxpy.bindings.dxdataobject_functions)
DXObject (class in dxpy.bindings)
DXPartLengthMismatchError
DXProject (class in dxpy.bindings.dxproject)
dxpy
module
dxpy.api
module
dxpy.app_builder
module
dxpy.bindings
module
dxpy.bindings.dxanalysis
module
dxpy.bindings.dxapp
module
dxpy.bindings.dxapp_container_functions
module
dxpy.bindings.dxapplet
module
dxpy.bindings.dxdataobject_functions
module
dxpy.bindings.dxfile
module
dxpy.bindings.dxfile_functions
module
dxpy.bindings.dxjob
module
dxpy.bindings.dxproject
module
dxpy.bindings.dxrecord
module
dxpy.bindings.dxworkflow
module
dxpy.bindings.search
module
dxpy.exceptions
module
dxpy.utils.exec_utils
module
DXRecord (class in dxpy.bindings.dxrecord)
DXSearchError
DXWorkflow (class in dxpy.bindings.dxworkflow)
E
entry_point() (in module dxpy.utils.exec_utils)
environment variable
DX_APISERVER_HOST
DX_APISERVER_PORT
DX_APISERVER_PROTOCOL
DX_JOB_ID
DX_PROJECT_CONTEXT_ID
DX_SECURITY_CONTEXT
DX_WORKSPACE_ID
HTTP_PROXY
HTTPS_PROXY
err_exit() (in module dxpy.exceptions)
error_message() (dxpy.exceptions.DXAPIError method)
(dxpy.exceptions.InvalidTLSProtocol method)
exit_with_exc_info() (in module dxpy.exceptions)
F
file_add_tags() (in module dxpy.api)
file_add_types() (in module dxpy.api)
file_close() (in module dxpy.api)
file_describe() (in module dxpy.api)
file_download() (in module dxpy.api)
file_get_details() (in module dxpy.api)
file_list_projects() (in module dxpy.api)
file_new() (in module dxpy.api)
file_remove_tags() (in module dxpy.api)
file_remove_types() (in module dxpy.api)
file_rename() (in module dxpy.api)
file_set_details() (in module dxpy.api)
file_set_properties() (in module dxpy.api)
file_set_visibility() (in module dxpy.api)
file_upload() (in module dxpy.api)
find_analyses() (in module dxpy.bindings.search)
find_apps() (in module dxpy.bindings.search)
find_data_objects() (in module dxpy.bindings.search)
find_executions() (in module dxpy.bindings.search)
find_global_executables() (in module dxpy.bindings.search)
find_global_workflows() (in module dxpy.bindings.search)
find_jobs() (in module dxpy.bindings.search)
find_one_app() (in module dxpy.bindings.search)
find_one_data_object() (in module dxpy.bindings.search)
find_one_project() (in module dxpy.bindings.search)
find_orgs() (in module dxpy.bindings.search)
find_projects() (in module dxpy.bindings.search)
flush() (dxpy.bindings.dxfile.DXFile method)
folder (dxpy.bindings.DXDataObject attribute)
format_exception() (in module dxpy.exceptions)
G
get() (dxpy.bindings.dxapp.DXApp method)
(dxpy.bindings.dxapplet.DXApplet method)
get_auth_server_name() (in module dxpy)
get_destination_project() (in module dxpy.app_builder)
get_details() (dxpy.bindings.DXDataObject method)
(in module dxpy.bindings.dxdataobject_functions)
get_download_url() (dxpy.bindings.dxfile.DXFile method)
get_dxlink_ids() (in module dxpy.bindings.dxdataobject_functions)
get_enabled_regions() (in module dxpy.app_builder)
get_handler() (in module dxpy.bindings.dxdataobject_functions)
get_id() (dxpy.bindings.dxapp.DXApp method)
(dxpy.bindings.DXObject method)
get_output_ref() (dxpy.bindings.dxanalysis.DXAnalysis method)
(dxpy.bindings.dxjob.DXJob method)
get_proj_id() (dxpy.bindings.DXDataObject method)
get_properties() (dxpy.bindings.DXDataObject method)
get_stage() (dxpy.bindings.dxworkflow.DXWorkflow method)
global_workflow_add_authorized_users() (in module dxpy.api)
global_workflow_add_categories() (in module dxpy.api)
global_workflow_add_developers() (in module dxpy.api)
global_workflow_add_tags() (in module dxpy.api)
global_workflow_delete() (in module dxpy.api)
global_workflow_describe() (in module dxpy.api)
global_workflow_list_authorized_users() (in module dxpy.api)
global_workflow_list_categories() (in module dxpy.api)
global_workflow_list_developers() (in module dxpy.api)
global_workflow_new() (in module dxpy.api)
global_workflow_publish() (in module dxpy.api)
global_workflow_remove_authorized_users() (in module dxpy.api)
global_workflow_remove_categories() (in module dxpy.api)
global_workflow_remove_developers() (in module dxpy.api)
global_workflow_remove_tags() (in module dxpy.api)
global_workflow_run() (in module dxpy.api)
global_workflow_update() (in module dxpy.api)
H
hidden (dxpy.bindings.DXDataObject attribute)
hide() (dxpy.bindings.DXDataObject method)
HTTPErrorWithContent
I
install() (dxpy.bindings.dxapp.DXApp method)
InternalError
InvalidAuthentication
InvalidInput
InvalidState
InvalidTLSProtocol
InvalidType
invite() (dxpy.bindings.dxproject.DXProject method)
is_dxlink() (in module dxpy.bindings.dxdataobject_functions)
is_link_local() (in module dxpy.app_builder)
is_locked() (dxpy.bindings.dxworkflow.DXWorkflow method)
J
job_add_tags() (in module dxpy.api)
job_describe() (in module dxpy.api)
job_get_identity_token() (in module dxpy.api)
job_get_log() (in module dxpy.api)
JOB_ID (in module dxpy)
job_new() (in module dxpy.api)
job_remove_tags() (in module dxpy.api)
job_set_properties() (in module dxpy.api)
job_terminate() (in module dxpy.api)
job_update() (in module dxpy.api)
L
links (dxpy.bindings.DXDataObject attribute)
list_folder() (dxpy.bindings.dxproject.DXContainer method)
list_projects() (dxpy.bindings.DXDataObject method)
list_subfolders() (in module dxpy.bindings.dxfile_functions)
load_app_resource() (in module dxpy.bindings.dxapp_container_functions)
load_from_cache() (in module dxpy.bindings.dxapp_container_functions)
M
MalformedJSON
media (dxpy.bindings.dxfile.DXFile attribute)
modified (dxpy.bindings.DXDataObject attribute)
module
dxpy
dxpy.api
dxpy.app_builder
dxpy.bindings
dxpy.bindings.dxanalysis
dxpy.bindings.dxapp
dxpy.bindings.dxapp_container_functions
dxpy.bindings.dxapplet
dxpy.bindings.dxdataobject_functions
dxpy.bindings.dxfile
dxpy.bindings.dxfile_functions
dxpy.bindings.dxjob
dxpy.bindings.dxproject
dxpy.bindings.dxrecord
dxpy.bindings.dxworkflow
dxpy.bindings.search
dxpy.exceptions
dxpy.utils.exec_utils
move() (dxpy.bindings.DXDataObject method)
(dxpy.bindings.dxproject.DXContainer method)
move_folder() (dxpy.bindings.dxproject.DXContainer method)
move_stage() (dxpy.bindings.dxworkflow.DXWorkflow method)
N
name (dxpy.bindings.DXDataObject attribute)
new() (dxpy.bindings.dxapp.DXApp method)
(dxpy.bindings.DXDataObject method)
(dxpy.bindings.dxjob.DXJob method)
(dxpy.bindings.dxproject.DXProject method)
new_dxfile() (in module dxpy.bindings.dxfile_functions)
new_dxjob() (in module dxpy.bindings.dxjob)
new_dxrecord() (in module dxpy.bindings.dxrecord)
new_dxworkflow() (in module dxpy.bindings.dxworkflow)
new_folder() (dxpy.bindings.dxproject.DXContainer method)
next() (dxpy.bindings.dxfile.DXFile method)
NO_PROJECT_HINT (dxpy.bindings.dxfile.DXFile attribute)
notifications_get() (in module dxpy.api)
notifications_mark_read() (in module dxpy.api)
O
open_dxfile() (in module dxpy.bindings.dxfile_functions)
org_describe() (in module dxpy.api)
org_find_apps() (in module dxpy.api)
(in module dxpy.bindings.search)
org_find_members() (in module dxpy.api)
(in module dxpy.bindings.search)
org_find_projects() (in module dxpy.api)
(in module dxpy.bindings.search)
org_invite() (in module dxpy.api)
org_new() (in module dxpy.api)
org_remove_member() (in module dxpy.api)
org_set_member_access() (in module dxpy.api)
org_update() (in module dxpy.api)
P
PermissionDenied
ProgramError
project_add_tags() (in module dxpy.api)
project_archive() (in module dxpy.api)
project_clone() (in module dxpy.api)
PROJECT_CONTEXT_ID (in module dxpy)
project_decrease_permissions() (in module dxpy.api)
project_describe() (in module dxpy.api)
project_destroy() (in module dxpy.api)
project_invite() (in module dxpy.api)
project_leave() (in module dxpy.api)
project_list_folder() (in module dxpy.api)
project_move() (in module dxpy.api)
project_new() (in module dxpy.api)
project_new_folder() (in module dxpy.api)
project_remove_folder() (in module dxpy.api)
project_remove_objects() (in module dxpy.api)
project_remove_tags() (in module dxpy.api)
project_rename_folder() (in module dxpy.api)
project_set_properties() (in module dxpy.api)
project_transfer() (in module dxpy.api)
project_unarchive() (in module dxpy.api)
project_update() (in module dxpy.api)
project_update_sponsorship() (in module dxpy.api)
publish() (dxpy.bindings.dxapp.DXApp method)
R
RateLimitConditional
read() (dxpy.bindings.dxfile.DXFile method)
record_add_tags() (in module dxpy.api)
record_add_types() (in module dxpy.api)
record_close() (in module dxpy.api)
record_describe() (in module dxpy.api)
record_get_details() (in module dxpy.api)
record_list_projects() (in module dxpy.api)
record_new() (in module dxpy.api)
record_remove_tags() (in module dxpy.api)
record_remove_types() (in module dxpy.api)
record_rename() (in module dxpy.api)
record_set_details() (in module dxpy.api)
record_set_properties() (in module dxpy.api)
record_set_visibility() (in module dxpy.api)
remove() (dxpy.bindings.DXDataObject method)
(in module dxpy.bindings.dxdataobject_functions)
remove_folder() (dxpy.bindings.dxproject.DXContainer method)
remove_objects() (dxpy.bindings.dxproject.DXContainer method)
remove_stage() (dxpy.bindings.dxworkflow.DXWorkflow method)
remove_tags() (dxpy.bindings.dxanalysis.DXAnalysis method)
(dxpy.bindings.dxapp.DXApp method)
(dxpy.bindings.DXDataObject method)
(dxpy.bindings.dxjob.DXJob method)
remove_types() (dxpy.bindings.DXDataObject method)
removeTags() (dxpy.bindings.dxapp.DXApp method)
rename() (dxpy.bindings.DXDataObject method)
resolve_data_objects() (in module dxpy.bindings.search)
ResourceNotFound
run() (dxpy.bindings.dxapp.DXApp method)
(dxpy.bindings.dxapplet.DXApplet method)
(dxpy.bindings.dxapplet.DXExecutable method)
(dxpy.bindings.dxworkflow.DXWorkflow method)
(in module dxpy.utils.exec_utils)
runSpec (dxpy.bindings.dxapplet.DXApplet attribute)
S
save_to_cache() (in module dxpy.bindings.dxapp_container_functions)
seek() (dxpy.bindings.dxfile.DXFile method)
ServiceUnavailable
set_api_server_info() (in module dxpy)
set_details() (dxpy.bindings.DXDataObject method)
set_http_threadpool_size() (dxpy.bindings.dxfile.DXFile class method)
set_id() (dxpy.bindings.dxapp.DXApp method)
(dxpy.bindings.DXDataObject method)
(dxpy.bindings.dxjob.DXJob method)
(dxpy.bindings.DXObject method)
set_ids() (dxpy.bindings.DXDataObject method)
(dxpy.bindings.dxfile.DXFile method)
set_job_id() (in module dxpy)
set_project_context() (in module dxpy)
set_properties() (dxpy.bindings.dxanalysis.DXAnalysis method)
(dxpy.bindings.DXDataObject method)
(dxpy.bindings.dxjob.DXJob method)
(dxpy.bindings.dxproject.DXProject method)
set_security_context() (in module dxpy)
set_watch_port() (in module dxpy)
set_workspace_id() (in module dxpy)
SpendingLimitExceeded
sponsored (dxpy.bindings.DXDataObject attribute)
state (dxpy.bindings.DXDataObject attribute)
summary (dxpy.bindings.dxapplet.DXApplet attribute)
system_describe_data_objects() (in module dxpy.api)
system_describe_executions() (in module dxpy.api)
system_describe_projects() (in module dxpy.api)
system_find_affiliates() (in module dxpy.api)
system_find_analyses() (in module dxpy.api)
system_find_apps() (in module dxpy.api)
system_find_data_objects() (in module dxpy.api)
system_find_databases() (in module dxpy.api)
system_find_executions() (in module dxpy.api)
system_find_global_workflows() (in module dxpy.api)
system_find_jobs() (in module dxpy.api)
system_find_orgs() (in module dxpy.api)
system_find_project_members() (in module dxpy.api)
system_find_projects() (in module dxpy.api)
system_find_users() (in module dxpy.api)
system_generate_batch_inputs() (in module dxpy.api)
system_global_search() (in module dxpy.api)
system_greet() (in module dxpy.api)
system_headers() (in module dxpy.api)
system_resolve_data_objects() (in module dxpy.api)
system_shorten_url() (in module dxpy.api)
system_whoami() (in module dxpy.api)
T
tags (dxpy.bindings.DXDataObject attribute)
tell() (dxpy.bindings.dxfile.DXFile method)
terminate() (dxpy.bindings.dxanalysis.DXAnalysis method)
(dxpy.bindings.dxjob.DXJob method)
title (dxpy.bindings.dxapplet.DXApplet attribute)
types (dxpy.bindings.DXDataObject attribute)
U
unarchive() (dxpy.bindings.dxfile.DXFile method)
unhide() (dxpy.bindings.DXDataObject method)
uninstall() (dxpy.bindings.dxapp.DXApp method)
update() (dxpy.bindings.dxapp.DXApp method)
(dxpy.bindings.dxjob.DXJob method)
(dxpy.bindings.dxproject.DXProject method)
(dxpy.bindings.dxworkflow.DXWorkflow method)
update_stage() (dxpy.bindings.dxworkflow.DXWorkflow method)
upload_applet() (in module dxpy.app_builder)
upload_local_file() (in module dxpy.bindings.dxfile_functions)
upload_part() (dxpy.bindings.dxfile.DXFile method)
upload_resources() (in module dxpy.app_builder)
upload_string() (in module dxpy.bindings.dxfile_functions)
UrllibInternalError
USER_AGENT (in module dxpy)
user_describe() (in module dxpy.api)
user_update() (in module dxpy.api)
V
verify_string_dxid() (in module dxpy.bindings)
W
wait_on_close() (dxpy.bindings.dxfile.DXFile method)
wait_on_done() (dxpy.bindings.dxanalysis.DXAnalysis method)
(dxpy.bindings.dxjob.DXJob method)
wait_until_parts_uploaded() (dxpy.bindings.dxfile.DXFile method)
workflow_add_stage() (in module dxpy.api)
workflow_add_tags() (in module dxpy.api)
workflow_add_types() (in module dxpy.api)
workflow_close() (in module dxpy.api)
workflow_describe() (in module dxpy.api)
workflow_dry_run() (in module dxpy.api)
workflow_get_details() (in module dxpy.api)
workflow_is_stage_compatible() (in module dxpy.api)
workflow_list_projects() (in module dxpy.api)
workflow_move_stage() (in module dxpy.api)
workflow_new() (in module dxpy.api)
workflow_overwrite() (in module dxpy.api)
workflow_remove_stage() (in module dxpy.api)
workflow_remove_tags() (in module dxpy.api)
workflow_remove_types() (in module dxpy.api)
workflow_rename() (in module dxpy.api)
workflow_run() (in module dxpy.api)
workflow_set_details() (in module dxpy.api)
workflow_set_properties() (in module dxpy.api)
workflow_set_visibility() (in module dxpy.api)
workflow_update() (in module dxpy.api)
workflow_update_stage_executable() (in module dxpy.api)
workflow_validate_batch() (in module dxpy.api)
WORKSPACE_ID (in module dxpy)
write() (dxpy.bindings.dxfile.DXFile method)
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