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A

ABANDONED - com.dnanexus.DataObjectState

AccessLevel - Enum in com.dnanexus

A permission level that a user can be given in a particular project or container.

add(JsonNode) - Method in class com.dnanexus.DXJSON.ArrayBuilder

Adds the specified JsonNode to the end of the array.

add(String) - Method in class com.dnanexus.DXJSON.ArrayBuilder

Adds the specified String to the end of the array.

addAll(List<JsonNode>) - Method in class com.dnanexus.DXJSON.ArrayBuilder

Adds the specified JsonNode objects, in order, to the end of the array.

addAllStrings(List<String>) - Method in class com.dnanexus.DXJSON.ArrayBuilder

Adds the specified String objects, in order, to the end of the array.

addFile(DXFile) - Method in class com.dnanexus.DXProject.ArchiveRequestBuilder

Adds the file to the list of files for archival.

addFile(DXFile) - Method in class com.dnanexus.DXProject.UnarchiveRequestBuilder

Adds the file to the list of files for unarchiving.

addFiles(DXFile...) - Method in class com.dnanexus.DXProject.ArchiveRequestBuilder

Adds the files to the list of files for archival.

addFiles(DXFile...) - Method in class com.dnanexus.DXProject.UnarchiveRequestBuilder

Adds the files to the list of files for unarchiving.

addFiles(Collection<DXFile>) - Method in class com.dnanexus.DXProject.ArchiveRequestBuilder

Adds the files to the list of files for archival.

addFiles(Collection<DXFile>) - Method in class com.dnanexus.DXProject.UnarchiveRequestBuilder

Adds the files to the list of files for unarchiving.

addStage(DXApplet, String, Object, int) - Method in class com.dnanexus.DXWorkflow

Adds a stage to a workflow.

addTags(Collection<String>) - Method in class com.dnanexus.DXDataObject.Builder

Adds the specified tags to the newly created data object.

addTags(Collection<String>) - Method in class com.dnanexus.ExecutableRunner

Adds the specified tags to the resulting execution.

addTags(List<String>) - Method in class com.dnanexus.DXDataObject

Adds the specified tags to the object.

addTypes(Collection<String>) - Method in class com.dnanexus.DXDataObject.Builder

Adds the specified types to the newly created data object.

addTypes(List<String>) - Method in class com.dnanexus.DXDataObject

Adds the specified types to the object.

ADMINISTER - com.dnanexus.AccessLevel

Allows the user to modify the member list and to modify or delete the container, and everything allowed by CONTRIBUTE.

allOf(DXSearch.PropertiesQuery...) - Static method in class com.dnanexus.DXSearch.PropertiesQuery

A query that must match all of the specified property queries recursively.

allOf(DXSearch.TagsQuery...) - Static method in class com.dnanexus.DXSearch.TagsQuery

A query that must match all of the specified tag queries recursively.

allOf(DXSearch.TypeQuery...) - Static method in class com.dnanexus.DXSearch.TypeQuery

A query that must match all of the specified type queries recursively.

allOf(String...) - Static method in class com.dnanexus.DXSearch.TagsQuery

A query that must match all of the specified tags.

allOf(String...) - Static method in class com.dnanexus.DXSearch.TypeQuery

A query that must match all of the specified types.

allOf(List<DXSearch.PropertiesQuery>) - Static method in class com.dnanexus.DXSearch.PropertiesQuery

A query that must match all of the property queries in the provided list.

allOf(List<DXSearch.TagsQuery>) - Static method in class com.dnanexus.DXSearch.TagsQuery

A query that must match all of the tag queries in the provided list.

allOf(List<DXSearch.TypeQuery>) - Static method in class com.dnanexus.DXSearch.TypeQuery

A query that must match all of the type queries in the provided list.

analysis - Variable in class com.dnanexus.DXExecution.DescribeResponseHash

analysisAddTags(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.analysisAddTags(String, Class) instead and supply your own class to deserialize to.

analysisAddTags(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.analysisAddTags(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

analysisAddTags(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.analysisAddTags(String, Object, Class) instead and supply your own class to deserialize to.

analysisAddTags(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.analysisAddTags(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

analysisAddTags(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the analysisAddTags method with an empty input, deserializing to an object of the specified class.

analysisAddTags(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the analysisAddTags method with an empty input using the given environment, deserializing to an object of the specified class.

analysisAddTags(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the analysisAddTags method with the given input, deserializing to an object of the specified class.

analysisAddTags(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the analysisAddTags method with the given input using the given environment, deserializing to an object of the specified class.

analysisDescribe(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.analysisDescribe(String, Class) instead and supply your own class to deserialize to.

analysisDescribe(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.analysisDescribe(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

analysisDescribe(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.analysisDescribe(String, Object, Class) instead and supply your own class to deserialize to.

analysisDescribe(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.analysisDescribe(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

analysisDescribe(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the analysisDescribe method with an empty input, deserializing to an object of the specified class.

analysisDescribe(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the analysisDescribe method with an empty input using the given environment, deserializing to an object of the specified class.

analysisDescribe(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the analysisDescribe method with the given input, deserializing to an object of the specified class.

analysisDescribe(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the analysisDescribe method with the given input using the given environment, deserializing to an object of the specified class.

analysisRemoveTags(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.analysisRemoveTags(String, Class) instead and supply your own class to deserialize to.

analysisRemoveTags(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.analysisRemoveTags(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

analysisRemoveTags(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.analysisRemoveTags(String, Object, Class) instead and supply your own class to deserialize to.

analysisRemoveTags(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.analysisRemoveTags(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

analysisRemoveTags(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the analysisRemoveTags method with an empty input, deserializing to an object of the specified class.

analysisRemoveTags(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the analysisRemoveTags method with an empty input using the given environment, deserializing to an object of the specified class.

analysisRemoveTags(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the analysisRemoveTags method with the given input, deserializing to an object of the specified class.

analysisRemoveTags(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the analysisRemoveTags method with the given input using the given environment, deserializing to an object of the specified class.

analysisSetProperties(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.analysisSetProperties(String, Class) instead and supply your own class to deserialize to.

analysisSetProperties(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.analysisSetProperties(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

analysisSetProperties(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.analysisSetProperties(String, Object, Class) instead and supply your own class to deserialize to.

analysisSetProperties(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.analysisSetProperties(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

analysisSetProperties(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the analysisSetProperties method with an empty input, deserializing to an object of the specified class.

analysisSetProperties(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the analysisSetProperties method with an empty input using the given environment, deserializing to an object of the specified class.

analysisSetProperties(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the analysisSetProperties method with the given input, deserializing to an object of the specified class.

analysisSetProperties(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the analysisSetProperties method with the given input using the given environment, deserializing to an object of the specified class.

AnalysisState - Enum in com.dnanexus

The state of an analysis in the system.

analysisTerminate(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.analysisTerminate(String, Class) instead and supply your own class to deserialize to.

analysisTerminate(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.analysisTerminate(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

analysisTerminate(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.analysisTerminate(String, Object, Class) instead and supply your own class to deserialize to.

analysisTerminate(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.analysisTerminate(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

analysisTerminate(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the analysisTerminate method with an empty input, deserializing to an object of the specified class.

analysisTerminate(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the analysisTerminate method with an empty input using the given environment, deserializing to an object of the specified class.

analysisTerminate(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the analysisTerminate method with the given input, deserializing to an object of the specified class.

analysisTerminate(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the analysisTerminate method with the given input using the given environment, deserializing to an object of the specified class.

anyOf(DXSearch.PropertiesQuery...) - Static method in class com.dnanexus.DXSearch.PropertiesQuery

A query that matches any of the specified property queries recursively.

anyOf(DXSearch.TagsQuery...) - Static method in class com.dnanexus.DXSearch.TagsQuery

A query that matches any of the specified tag queries recursively.

anyOf(DXSearch.TypeQuery...) - Static method in class com.dnanexus.DXSearch.TypeQuery

A query that matches any of the specified type queries recursively.

anyOf(String...) - Static method in class com.dnanexus.DXSearch.TagsQuery

A query that matches any of the specified tags.

anyOf(String...) - Static method in class com.dnanexus.DXSearch.TypeQuery

A query that matches any of the specified types.

anyOf(List<DXSearch.PropertiesQuery>) - Static method in class com.dnanexus.DXSearch.PropertiesQuery

A query that matches any of the property queries in the provided list.

anyOf(List<DXSearch.TagsQuery>) - Static method in class com.dnanexus.DXSearch.TagsQuery

A query that matches any of the tag queries in the provided list.

anyOf(List<DXSearch.TypeQuery>) - Static method in class com.dnanexus.DXSearch.TypeQuery

A query that matches any of the type queries in the provided list.

apiCallOnObject(String, DXHTTPRequest.RetryStrategy) - Method in class com.dnanexus.DXObject

Calls the specified API method on this object (with an empty input hash) and returns its result.

apiCallOnObject(String, JsonNode, DXHTTPRequest.RetryStrategy) - Method in class com.dnanexus.DXObject

Calls the specified API method on this object (with the specified input hash) and returns its result.

appAddAuthorizedUsers(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appAddAuthorizedUsers(String, Class) instead and supply your own class to deserialize to.

appAddAuthorizedUsers(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appAddAuthorizedUsers(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appAddAuthorizedUsers(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appAddAuthorizedUsers(String, Object, Class) instead and supply your own class to deserialize to.

appAddAuthorizedUsers(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appAddAuthorizedUsers(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appAddAuthorizedUsers(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appAddAuthorizedUsers method with an empty input, deserializing to an object of the specified class.

appAddAuthorizedUsers(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appAddAuthorizedUsers method with an empty input using the given environment, deserializing to an object of the specified class.

appAddAuthorizedUsers(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appAddAuthorizedUsers method with the given input, deserializing to an object of the specified class.

appAddAuthorizedUsers(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appAddAuthorizedUsers method with the given input using the given environment, deserializing to an object of the specified class.

appAddCategories(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appAddCategories(String, Class) instead and supply your own class to deserialize to.

appAddCategories(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appAddCategories(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appAddCategories(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appAddCategories(String, Object, Class) instead and supply your own class to deserialize to.

appAddCategories(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appAddCategories(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appAddCategories(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appAddCategories method with an empty input, deserializing to an object of the specified class.

appAddCategories(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appAddCategories method with an empty input using the given environment, deserializing to an object of the specified class.

appAddCategories(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appAddCategories method with the given input, deserializing to an object of the specified class.

appAddCategories(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appAddCategories method with the given input using the given environment, deserializing to an object of the specified class.

appAddDevelopers(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appAddDevelopers(String, Class) instead and supply your own class to deserialize to.

appAddDevelopers(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appAddDevelopers(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appAddDevelopers(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appAddDevelopers(String, Object, Class) instead and supply your own class to deserialize to.

appAddDevelopers(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appAddDevelopers(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appAddDevelopers(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appAddDevelopers method with an empty input, deserializing to an object of the specified class.

appAddDevelopers(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appAddDevelopers method with an empty input using the given environment, deserializing to an object of the specified class.

appAddDevelopers(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appAddDevelopers method with the given input, deserializing to an object of the specified class.

appAddDevelopers(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appAddDevelopers method with the given input using the given environment, deserializing to an object of the specified class.

appAddTags(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appAddTags(String, Class) instead and supply your own class to deserialize to.

appAddTags(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appAddTags(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appAddTags(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appAddTags(String, Object, Class) instead and supply your own class to deserialize to.

appAddTags(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appAddTags(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appAddTags(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appAddTags method with an empty input, deserializing to an object of the specified class.

appAddTags(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appAddTags method with an empty input using the given environment, deserializing to an object of the specified class.

appAddTags(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appAddTags method with the given input, deserializing to an object of the specified class.

appAddTags(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appAddTags method with the given input using the given environment, deserializing to an object of the specified class.

appDelete(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appDelete(String, Class) instead and supply your own class to deserialize to.

appDelete(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appDelete(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appDelete(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appDelete(String, Object, Class) instead and supply your own class to deserialize to.

appDelete(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appDelete(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appDelete(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appDelete method with an empty input, deserializing to an object of the specified class.

appDelete(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appDelete method with an empty input using the given environment, deserializing to an object of the specified class.

appDelete(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appDelete method with the given input, deserializing to an object of the specified class.

appDelete(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appDelete method with the given input using the given environment, deserializing to an object of the specified class.

appDescribe(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appDescribe(String, Class) instead and supply your own class to deserialize to.

appDescribe(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appDescribe(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appDescribe(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appDescribe(String, Object, Class) instead and supply your own class to deserialize to.

appDescribe(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appDescribe(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appDescribe(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appDescribe method with an empty input, deserializing to an object of the specified class.

appDescribe(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appDescribe method with an empty input using the given environment, deserializing to an object of the specified class.

appDescribe(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appDescribe method with the given input, deserializing to an object of the specified class.

appDescribe(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appDescribe method with the given input using the given environment, deserializing to an object of the specified class.

appGet(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appGet(String, Class) instead and supply your own class to deserialize to.

appGet(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appGet(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appGet(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appGet(String, Object, Class) instead and supply your own class to deserialize to.

appGet(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appGet(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appGet(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appGet method with an empty input, deserializing to an object of the specified class.

appGet(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appGet method with an empty input using the given environment, deserializing to an object of the specified class.

appGet(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appGet method with the given input, deserializing to an object of the specified class.

appGet(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appGet method with the given input using the given environment, deserializing to an object of the specified class.

appInstall(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appInstall(String, Class) instead and supply your own class to deserialize to.

appInstall(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appInstall(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appInstall(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appInstall(String, Object, Class) instead and supply your own class to deserialize to.

appInstall(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appInstall(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appInstall(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appInstall method with an empty input, deserializing to an object of the specified class.

appInstall(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appInstall method with an empty input using the given environment, deserializing to an object of the specified class.

appInstall(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appInstall method with the given input, deserializing to an object of the specified class.

appInstall(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appInstall method with the given input using the given environment, deserializing to an object of the specified class.

APPLET - com.dnanexus.IOClass

appletAddTags(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletAddTags(String, Class) instead and supply your own class to deserialize to.

appletAddTags(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletAddTags(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appletAddTags(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletAddTags(String, Object, Class) instead and supply your own class to deserialize to.

appletAddTags(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletAddTags(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appletAddTags(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appletAddTags method with an empty input, deserializing to an object of the specified class.

appletAddTags(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appletAddTags method with an empty input using the given environment, deserializing to an object of the specified class.

appletAddTags(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appletAddTags method with the given input, deserializing to an object of the specified class.

appletAddTags(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appletAddTags method with the given input using the given environment, deserializing to an object of the specified class.

appletDescribe(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletDescribe(String, Class) instead and supply your own class to deserialize to.

appletDescribe(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletDescribe(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appletDescribe(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletDescribe(String, Object, Class) instead and supply your own class to deserialize to.

appletDescribe(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletDescribe(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appletDescribe(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appletDescribe method with an empty input, deserializing to an object of the specified class.

appletDescribe(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appletDescribe method with an empty input using the given environment, deserializing to an object of the specified class.

appletDescribe(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appletDescribe method with the given input, deserializing to an object of the specified class.

appletDescribe(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appletDescribe method with the given input using the given environment, deserializing to an object of the specified class.

appletGet(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletGet(String, Class) instead and supply your own class to deserialize to.

appletGet(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletGet(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appletGet(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletGet(String, Object, Class) instead and supply your own class to deserialize to.

appletGet(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletGet(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appletGet(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appletGet method with an empty input, deserializing to an object of the specified class.

appletGet(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appletGet method with an empty input using the given environment, deserializing to an object of the specified class.

appletGet(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appletGet method with the given input, deserializing to an object of the specified class.

appletGet(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appletGet method with the given input using the given environment, deserializing to an object of the specified class.

appletGetDetails(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletGetDetails(String, Class) instead and supply your own class to deserialize to.

appletGetDetails(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletGetDetails(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appletGetDetails(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletGetDetails(String, Object, Class) instead and supply your own class to deserialize to.

appletGetDetails(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletGetDetails(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appletGetDetails(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appletGetDetails method with an empty input, deserializing to an object of the specified class.

appletGetDetails(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appletGetDetails method with an empty input using the given environment, deserializing to an object of the specified class.

appletGetDetails(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appletGetDetails method with the given input, deserializing to an object of the specified class.

appletGetDetails(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appletGetDetails method with the given input using the given environment, deserializing to an object of the specified class.

appletListProjects(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletListProjects(String, Class) instead and supply your own class to deserialize to.

appletListProjects(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletListProjects(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appletListProjects(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletListProjects(String, Object, Class) instead and supply your own class to deserialize to.

appletListProjects(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletListProjects(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appletListProjects(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appletListProjects method with an empty input, deserializing to an object of the specified class.

appletListProjects(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appletListProjects method with an empty input using the given environment, deserializing to an object of the specified class.

appletListProjects(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appletListProjects method with the given input, deserializing to an object of the specified class.

appletListProjects(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appletListProjects method with the given input using the given environment, deserializing to an object of the specified class.

appletNew() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletNew(Class) instead and supply your own class to deserialize to.

appletNew(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletNew(Class, DXEnvironment) instead and supply your own class to deserialize to.

appletNew(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletNew(Object, Class) instead and supply your own class to deserialize to.

appletNew(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletNew(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appletNew(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appletNew method with an empty input, deserializing to an object of the specified class.

appletNew(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appletNew method with an empty input using the specified environment, deserializing to an object of the specified class.

appletNew(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appletNew method with the specified input, deserializing to an object of the specified class.

appletNew(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appletNew method with the specified input using the specified environment, deserializing to an object of the specified class.

appletRemoveTags(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletRemoveTags(String, Class) instead and supply your own class to deserialize to.

appletRemoveTags(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletRemoveTags(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appletRemoveTags(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletRemoveTags(String, Object, Class) instead and supply your own class to deserialize to.

appletRemoveTags(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletRemoveTags(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appletRemoveTags(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appletRemoveTags method with an empty input, deserializing to an object of the specified class.

appletRemoveTags(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appletRemoveTags method with an empty input using the given environment, deserializing to an object of the specified class.

appletRemoveTags(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appletRemoveTags method with the given input, deserializing to an object of the specified class.

appletRemoveTags(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appletRemoveTags method with the given input using the given environment, deserializing to an object of the specified class.

appletRename(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletRename(String, Class) instead and supply your own class to deserialize to.

appletRename(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletRename(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appletRename(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletRename(String, Object, Class) instead and supply your own class to deserialize to.

appletRename(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletRename(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appletRename(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appletRename method with an empty input, deserializing to an object of the specified class.

appletRename(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appletRename method with an empty input using the given environment, deserializing to an object of the specified class.

appletRename(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appletRename method with the given input, deserializing to an object of the specified class.

appletRename(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appletRename method with the given input using the given environment, deserializing to an object of the specified class.

appletRun(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletRun(String, Class) instead and supply your own class to deserialize to.

appletRun(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletRun(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appletRun(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletRun(String, Object, Class) instead and supply your own class to deserialize to.

appletRun(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletRun(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appletRun(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appletRun method with an empty input, deserializing to an object of the specified class.

appletRun(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appletRun method with an empty input using the given environment, deserializing to an object of the specified class.

appletRun(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appletRun method with the given input, deserializing to an object of the specified class.

appletRun(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appletRun method with the given input using the given environment, deserializing to an object of the specified class.

appletSetProperties(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletSetProperties(String, Class) instead and supply your own class to deserialize to.

appletSetProperties(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletSetProperties(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appletSetProperties(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletSetProperties(String, Object, Class) instead and supply your own class to deserialize to.

appletSetProperties(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletSetProperties(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appletSetProperties(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appletSetProperties method with an empty input, deserializing to an object of the specified class.

appletSetProperties(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appletSetProperties method with an empty input using the given environment, deserializing to an object of the specified class.

appletSetProperties(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appletSetProperties method with the given input, deserializing to an object of the specified class.

appletSetProperties(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appletSetProperties method with the given input using the given environment, deserializing to an object of the specified class.

appletValidateBatch(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletValidateBatch(String, Class) instead and supply your own class to deserialize to.

appletValidateBatch(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletValidateBatch(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appletValidateBatch(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletValidateBatch(String, Object, Class) instead and supply your own class to deserialize to.

appletValidateBatch(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appletValidateBatch(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appletValidateBatch(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appletValidateBatch method with an empty input, deserializing to an object of the specified class.

appletValidateBatch(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appletValidateBatch method with an empty input using the given environment, deserializing to an object of the specified class.

appletValidateBatch(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appletValidateBatch method with the given input, deserializing to an object of the specified class.

appletValidateBatch(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appletValidateBatch method with the given input using the given environment, deserializing to an object of the specified class.

appListAuthorizedUsers(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appListAuthorizedUsers(String, Class) instead and supply your own class to deserialize to.

appListAuthorizedUsers(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appListAuthorizedUsers(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appListAuthorizedUsers(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appListAuthorizedUsers(String, Object, Class) instead and supply your own class to deserialize to.

appListAuthorizedUsers(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appListAuthorizedUsers(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appListAuthorizedUsers(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appListAuthorizedUsers method with an empty input, deserializing to an object of the specified class.

appListAuthorizedUsers(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appListAuthorizedUsers method with an empty input using the given environment, deserializing to an object of the specified class.

appListAuthorizedUsers(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appListAuthorizedUsers method with the given input, deserializing to an object of the specified class.

appListAuthorizedUsers(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appListAuthorizedUsers method with the given input using the given environment, deserializing to an object of the specified class.

appListCategories(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appListCategories(String, Class) instead and supply your own class to deserialize to.

appListCategories(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appListCategories(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appListCategories(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appListCategories(String, Object, Class) instead and supply your own class to deserialize to.

appListCategories(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appListCategories(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appListCategories(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appListCategories method with an empty input, deserializing to an object of the specified class.

appListCategories(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appListCategories method with an empty input using the given environment, deserializing to an object of the specified class.

appListCategories(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appListCategories method with the given input, deserializing to an object of the specified class.

appListCategories(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appListCategories method with the given input using the given environment, deserializing to an object of the specified class.

appListDevelopers(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appListDevelopers(String, Class) instead and supply your own class to deserialize to.

appListDevelopers(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appListDevelopers(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appListDevelopers(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appListDevelopers(String, Object, Class) instead and supply your own class to deserialize to.

appListDevelopers(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appListDevelopers(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appListDevelopers(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appListDevelopers method with an empty input, deserializing to an object of the specified class.

appListDevelopers(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appListDevelopers method with an empty input using the given environment, deserializing to an object of the specified class.

appListDevelopers(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appListDevelopers method with the given input, deserializing to an object of the specified class.

appListDevelopers(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appListDevelopers method with the given input using the given environment, deserializing to an object of the specified class.

appNew() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appNew(Class) instead and supply your own class to deserialize to.

appNew(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appNew(Class, DXEnvironment) instead and supply your own class to deserialize to.

appNew(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appNew(Object, Class) instead and supply your own class to deserialize to.

appNew(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appNew(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appNew(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appNew method with an empty input, deserializing to an object of the specified class.

appNew(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appNew method with an empty input using the specified environment, deserializing to an object of the specified class.

appNew(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appNew method with the specified input, deserializing to an object of the specified class.

appNew(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appNew method with the specified input using the specified environment, deserializing to an object of the specified class.

appPublish(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appPublish(String, Class) instead and supply your own class to deserialize to.

appPublish(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appPublish(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appPublish(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appPublish(String, Object, Class) instead and supply your own class to deserialize to.

appPublish(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appPublish(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appPublish(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appPublish method with an empty input, deserializing to an object of the specified class.

appPublish(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appPublish method with an empty input using the given environment, deserializing to an object of the specified class.

appPublish(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appPublish method with the given input, deserializing to an object of the specified class.

appPublish(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appPublish method with the given input using the given environment, deserializing to an object of the specified class.

appRemoveAuthorizedUsers(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appRemoveAuthorizedUsers(String, Class) instead and supply your own class to deserialize to.

appRemoveAuthorizedUsers(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appRemoveAuthorizedUsers(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appRemoveAuthorizedUsers(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appRemoveAuthorizedUsers(String, Object, Class) instead and supply your own class to deserialize to.

appRemoveAuthorizedUsers(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appRemoveAuthorizedUsers(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appRemoveAuthorizedUsers(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appRemoveAuthorizedUsers method with an empty input, deserializing to an object of the specified class.

appRemoveAuthorizedUsers(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appRemoveAuthorizedUsers method with an empty input using the given environment, deserializing to an object of the specified class.

appRemoveAuthorizedUsers(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appRemoveAuthorizedUsers method with the given input, deserializing to an object of the specified class.

appRemoveAuthorizedUsers(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appRemoveAuthorizedUsers method with the given input using the given environment, deserializing to an object of the specified class.

appRemoveCategories(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appRemoveCategories(String, Class) instead and supply your own class to deserialize to.

appRemoveCategories(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appRemoveCategories(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appRemoveCategories(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appRemoveCategories(String, Object, Class) instead and supply your own class to deserialize to.

appRemoveCategories(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appRemoveCategories(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appRemoveCategories(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appRemoveCategories method with an empty input, deserializing to an object of the specified class.

appRemoveCategories(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appRemoveCategories method with an empty input using the given environment, deserializing to an object of the specified class.

appRemoveCategories(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appRemoveCategories method with the given input, deserializing to an object of the specified class.

appRemoveCategories(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appRemoveCategories method with the given input using the given environment, deserializing to an object of the specified class.

appRemoveDevelopers(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appRemoveDevelopers(String, Class) instead and supply your own class to deserialize to.

appRemoveDevelopers(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appRemoveDevelopers(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appRemoveDevelopers(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appRemoveDevelopers(String, Object, Class) instead and supply your own class to deserialize to.

appRemoveDevelopers(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appRemoveDevelopers(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appRemoveDevelopers(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appRemoveDevelopers method with an empty input, deserializing to an object of the specified class.

appRemoveDevelopers(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appRemoveDevelopers method with an empty input using the given environment, deserializing to an object of the specified class.

appRemoveDevelopers(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appRemoveDevelopers method with the given input, deserializing to an object of the specified class.

appRemoveDevelopers(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appRemoveDevelopers method with the given input using the given environment, deserializing to an object of the specified class.

appRemoveTags(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appRemoveTags(String, Class) instead and supply your own class to deserialize to.

appRemoveTags(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appRemoveTags(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appRemoveTags(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appRemoveTags(String, Object, Class) instead and supply your own class to deserialize to.

appRemoveTags(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appRemoveTags(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appRemoveTags(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appRemoveTags method with an empty input, deserializing to an object of the specified class.

appRemoveTags(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appRemoveTags method with an empty input using the given environment, deserializing to an object of the specified class.

appRemoveTags(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appRemoveTags method with the given input, deserializing to an object of the specified class.

appRemoveTags(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appRemoveTags method with the given input using the given environment, deserializing to an object of the specified class.

appRun(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appRun(String, Class) instead and supply your own class to deserialize to.

appRun(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appRun(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appRun(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appRun(String, Object, Class) instead and supply your own class to deserialize to.

appRun(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appRun(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appRun(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appRun method with an empty input, deserializing to an object of the specified class.

appRun(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appRun method with an empty input using the given environment, deserializing to an object of the specified class.

appRun(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appRun method with the given input, deserializing to an object of the specified class.

appRun(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appRun method with the given input using the given environment, deserializing to an object of the specified class.

appUninstall(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appUninstall(String, Class) instead and supply your own class to deserialize to.

appUninstall(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appUninstall(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appUninstall(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appUninstall(String, Object, Class) instead and supply your own class to deserialize to.

appUninstall(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appUninstall(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appUninstall(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appUninstall method with an empty input, deserializing to an object of the specified class.

appUninstall(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appUninstall method with an empty input using the given environment, deserializing to an object of the specified class.

appUninstall(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appUninstall method with the given input, deserializing to an object of the specified class.

appUninstall(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appUninstall method with the given input using the given environment, deserializing to an object of the specified class.

appUpdate(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appUpdate(String, Class) instead and supply your own class to deserialize to.

appUpdate(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appUpdate(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appUpdate(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appUpdate(String, Object, Class) instead and supply your own class to deserialize to.

appUpdate(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appUpdate(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appUpdate(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appUpdate method with an empty input, deserializing to an object of the specified class.

appUpdate(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appUpdate method with an empty input using the given environment, deserializing to an object of the specified class.

appUpdate(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appUpdate method with the given input, deserializing to an object of the specified class.

appUpdate(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appUpdate method with the given input using the given environment, deserializing to an object of the specified class.

appValidateBatch(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appValidateBatch(String, Class) instead and supply your own class to deserialize to.

appValidateBatch(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appValidateBatch(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

appValidateBatch(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appValidateBatch(String, Object, Class) instead and supply your own class to deserialize to.

appValidateBatch(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.appValidateBatch(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

appValidateBatch(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appValidateBatch method with an empty input, deserializing to an object of the specified class.

appValidateBatch(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appValidateBatch method with an empty input using the given environment, deserializing to an object of the specified class.

appValidateBatch(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the appValidateBatch method with the given input, deserializing to an object of the specified class.

appValidateBatch(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the appValidateBatch method with the given input using the given environment, deserializing to an object of the specified class.

ARCHIVAL - com.dnanexus.ArchivalState

Archival requested on the current file, but other copies of the same file are in the live state in multiple projects with the same billTo entity.

ArchivalState - Enum in com.dnanexus

Archival states of file object.

archive() - Method in class com.dnanexus.DXProject

Request specified files or folder to be archived.

ARCHIVED - com.dnanexus.ArchivalState

The file is in archival storage, such as AWS S3 Glacier or Azure Blob ARCHIVE.

ArchiveRequestBuilder() - Constructor for class com.dnanexus.DXProject.ArchiveRequestBuilder

ArchiveResults() - Constructor for class com.dnanexus.DXProject.ArchiveResults

ARRAY_OF_APPLETS - com.dnanexus.IOClass

ARRAY_OF_BOOLEANS - com.dnanexus.IOClass

ARRAY_OF_FILES - com.dnanexus.IOClass

ARRAY_OF_FLOATS - com.dnanexus.IOClass

ARRAY_OF_INTS - com.dnanexus.IOClass

ARRAY_OF_RECORDS - com.dnanexus.IOClass

ARRAY_OF_STRINGS - com.dnanexus.IOClass

ARRAY_OF_WORKFLOWS - com.dnanexus.IOClass

ArrayBuilder() - Constructor for class com.dnanexus.DXJSON.ArrayBuilder

Initializes an ArrayBuilder which will generate an empty array.

ASCENDING - com.dnanexus.DXSearch.Ordering

Search for only visible items.

asList() - Method in interface com.dnanexus.DXSearch.ObjectProducer

Returns a list of the matching items.

B

billTo - Variable in class com.dnanexus.DXExecution.DescribeResponseHash

BOOLEAN - com.dnanexus.IOClass

build() - Method in class com.dnanexus.DXApplet.Builder

Creates the applet.

build() - Method in class com.dnanexus.DXDataObject.Builder

Creates the new data object.

build() - Method in class com.dnanexus.DXEnvironment.Builder

Build the DXEnvironment from the settings configured so far.

build() - Method in class com.dnanexus.DXFile.Builder

Creates the file.

build() - Method in class com.dnanexus.DXJSON.ArrayBuilder

Generates a JSON array.

build() - Method in class com.dnanexus.DXJSON.ObjectBuilder

Generates a JSON object.

build() - Method in class com.dnanexus.DXProject.Builder

Creates the project.

build() - Method in class com.dnanexus.DXRecord.Builder

Creates the record.

build() - Method in class com.dnanexus.DXWorkflow.Builder

Creates the workflow.

build() - Method in class com.dnanexus.InputParameter.Builder

Builds the input parameter object.

build() - Method in class com.dnanexus.OutputParameter.Builder

Builds the output parameter object.

build() - Method in class com.dnanexus.RunSpecification.Builder

Creates the run specification.

Builder() - Constructor for class com.dnanexus.DXDataObject.Builder

Builder() - Constructor for class com.dnanexus.DXEnvironment.Builder

Deprecated.

Use DXEnvironment.Builder.fromDefaults() instead

Builder(DXEnvironment) - Constructor for class com.dnanexus.DXDataObject.Builder

BULK - com.dnanexus.UnarchivingRate

C

cachedDescribe - Variable in class com.dnanexus.DXDataObject

cachedDescribe - Variable in class com.dnanexus.DXExecution

checkAndFixParameters() - Method in class com.dnanexus.DXApplet.Builder

Ensures that the project was either explicitly set or that the environment specifies a workspace, and that the run specification is provided.

checkAndFixParameters() - Method in class com.dnanexus.DXDataObject.Builder

Ensures that the project was either explicitly set or that the environment specifies a workspace.

checkCachedDescribeAvailable() - Method in class com.dnanexus.DXDataObject

Verifies that this object carries cached describe data.

checkCachedDescribeAvailable() - Method in class com.dnanexus.DXExecution

Verifies that this object carries cached describe data.

checkDXLinkFormat(Map<String, Object>) - Static method in class com.dnanexus.DXDataObject

Verifies that the specified map has the format of a DNAnexus link.

close() - Method in class com.dnanexus.DXDataObject

Closes the data object.

close() - Method in class com.dnanexus.DXEnvironment

close() - Method in class com.dnanexus.DXFile

close() - Method in class com.dnanexus.DXRecord

close() - Method in class com.dnanexus.DXWorkflow

closeAndWait() - Method in class com.dnanexus.DXDataObject

Closes the data object and waits until the close operation is complete.

closeAndWait() - Method in class com.dnanexus.DXFile

closeAndWait() - Method in class com.dnanexus.DXRecord

closeAndWait() - Method in class com.dnanexus.DXWorkflow

CLOSED - com.dnanexus.DataObjectState

CLOSING - com.dnanexus.DataObjectState

com.dnanexus - package com.dnanexus

Provides low- and high-level bindings to the DNAnexus Platform.

com.dnanexus.exceptions - package com.dnanexus.exceptions

Exception classes that may be thrown by DNAnexus API calls.

containerClone(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerClone(String, Class) instead and supply your own class to deserialize to.

containerClone(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerClone(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

containerClone(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerClone(String, Object, Class) instead and supply your own class to deserialize to.

containerClone(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerClone(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

containerClone(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the containerClone method with an empty input, deserializing to an object of the specified class.

containerClone(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the containerClone method with an empty input using the given environment, deserializing to an object of the specified class.

containerClone(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the containerClone method with the given input, deserializing to an object of the specified class.

containerClone(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the containerClone method with the given input using the given environment, deserializing to an object of the specified class.

containerDescribe(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerDescribe(String, Class) instead and supply your own class to deserialize to.

containerDescribe(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerDescribe(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

containerDescribe(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerDescribe(String, Object, Class) instead and supply your own class to deserialize to.

containerDescribe(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerDescribe(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

containerDescribe(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the containerDescribe method with an empty input, deserializing to an object of the specified class.

containerDescribe(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the containerDescribe method with an empty input using the given environment, deserializing to an object of the specified class.

containerDescribe(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the containerDescribe method with the given input, deserializing to an object of the specified class.

containerDescribe(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the containerDescribe method with the given input using the given environment, deserializing to an object of the specified class.

containerDestroy(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerDestroy(String, Class) instead and supply your own class to deserialize to.

containerDestroy(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerDestroy(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

containerDestroy(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerDestroy(String, Object, Class) instead and supply your own class to deserialize to.

containerDestroy(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerDestroy(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

containerDestroy(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the containerDestroy method with an empty input, deserializing to an object of the specified class.

containerDestroy(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the containerDestroy method with an empty input using the given environment, deserializing to an object of the specified class.

containerDestroy(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the containerDestroy method with the given input, deserializing to an object of the specified class.

containerDestroy(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the containerDestroy method with the given input using the given environment, deserializing to an object of the specified class.

containerListFolder(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerListFolder(String, Class) instead and supply your own class to deserialize to.

containerListFolder(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerListFolder(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

containerListFolder(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerListFolder(String, Object, Class) instead and supply your own class to deserialize to.

containerListFolder(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerListFolder(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

containerListFolder(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the containerListFolder method with an empty input, deserializing to an object of the specified class.

containerListFolder(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the containerListFolder method with an empty input using the given environment, deserializing to an object of the specified class.

containerListFolder(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the containerListFolder method with the given input, deserializing to an object of the specified class.

containerListFolder(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the containerListFolder method with the given input using the given environment, deserializing to an object of the specified class.

containerMove(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerMove(String, Class) instead and supply your own class to deserialize to.

containerMove(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerMove(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

containerMove(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerMove(String, Object, Class) instead and supply your own class to deserialize to.

containerMove(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerMove(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

containerMove(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the containerMove method with an empty input, deserializing to an object of the specified class.

containerMove(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the containerMove method with an empty input using the given environment, deserializing to an object of the specified class.

containerMove(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the containerMove method with the given input, deserializing to an object of the specified class.

containerMove(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the containerMove method with the given input using the given environment, deserializing to an object of the specified class.

containerNewFolder(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerNewFolder(String, Class) instead and supply your own class to deserialize to.

containerNewFolder(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerNewFolder(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

containerNewFolder(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerNewFolder(String, Object, Class) instead and supply your own class to deserialize to.

containerNewFolder(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerNewFolder(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

containerNewFolder(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the containerNewFolder method with an empty input, deserializing to an object of the specified class.

containerNewFolder(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the containerNewFolder method with an empty input using the given environment, deserializing to an object of the specified class.

containerNewFolder(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the containerNewFolder method with the given input, deserializing to an object of the specified class.

containerNewFolder(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the containerNewFolder method with the given input using the given environment, deserializing to an object of the specified class.

containerRemoveFolder(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerRemoveFolder(String, Class) instead and supply your own class to deserialize to.

containerRemoveFolder(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerRemoveFolder(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

containerRemoveFolder(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerRemoveFolder(String, Object, Class) instead and supply your own class to deserialize to.

containerRemoveFolder(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerRemoveFolder(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

containerRemoveFolder(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the containerRemoveFolder method with an empty input, deserializing to an object of the specified class.

containerRemoveFolder(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the containerRemoveFolder method with an empty input using the given environment, deserializing to an object of the specified class.

containerRemoveFolder(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the containerRemoveFolder method with the given input, deserializing to an object of the specified class.

containerRemoveFolder(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the containerRemoveFolder method with the given input using the given environment, deserializing to an object of the specified class.

containerRemoveObjects(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerRemoveObjects(String, Class) instead and supply your own class to deserialize to.

containerRemoveObjects(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerRemoveObjects(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

containerRemoveObjects(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerRemoveObjects(String, Object, Class) instead and supply your own class to deserialize to.

containerRemoveObjects(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerRemoveObjects(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

containerRemoveObjects(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the containerRemoveObjects method with an empty input, deserializing to an object of the specified class.

containerRemoveObjects(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the containerRemoveObjects method with an empty input using the given environment, deserializing to an object of the specified class.

containerRemoveObjects(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the containerRemoveObjects method with the given input, deserializing to an object of the specified class.

containerRemoveObjects(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the containerRemoveObjects method with the given input using the given environment, deserializing to an object of the specified class.

containerRenameFolder(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerRenameFolder(String, Class) instead and supply your own class to deserialize to.

containerRenameFolder(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerRenameFolder(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

containerRenameFolder(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerRenameFolder(String, Object, Class) instead and supply your own class to deserialize to.

containerRenameFolder(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.containerRenameFolder(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

containerRenameFolder(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the containerRenameFolder method with an empty input, deserializing to an object of the specified class.

containerRenameFolder(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the containerRenameFolder method with an empty input using the given environment, deserializing to an object of the specified class.

containerRenameFolder(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the containerRenameFolder method with the given input, deserializing to an object of the specified class.

containerRenameFolder(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the containerRenameFolder method with the given input using the given environment, deserializing to an object of the specified class.

CONTRIBUTE - com.dnanexus.AccessLevel

Allows the user to modify the contents of all types of data objects, delete objects (if the "PROTECTED" flag on the container is set to false), and everything allowed by UPLOAD.

create() - Static method in class com.dnanexus.DXEnvironment

Creates a DXEnvironment from the default settings.

created - Variable in class com.dnanexus.DXExecution.DescribeResponseHash

createdAfter(Date) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns data objects that were created after the specified time.

createdAfter(Date) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only return executions created after the specified date.

createdBefore(Date) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns data objects that were created before the specified time.

createdBefore(Date) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only return executions created before the specified date.

createParents - Variable in class com.dnanexus.DXDataObject.Builder

D

databaseAddTags(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseAddTags(String, Class) instead and supply your own class to deserialize to.

databaseAddTags(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseAddTags(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseAddTags(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseAddTags(String, Object, Class) instead and supply your own class to deserialize to.

databaseAddTags(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseAddTags(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseAddTags(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseAddTags method with an empty input, deserializing to an object of the specified class.

databaseAddTags(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseAddTags method with an empty input using the given environment, deserializing to an object of the specified class.

databaseAddTags(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseAddTags method with the given input, deserializing to an object of the specified class.

databaseAddTags(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseAddTags method with the given input using the given environment, deserializing to an object of the specified class.

databaseAddTypes(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseAddTypes(String, Class) instead and supply your own class to deserialize to.

databaseAddTypes(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseAddTypes(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseAddTypes(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseAddTypes(String, Object, Class) instead and supply your own class to deserialize to.

databaseAddTypes(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseAddTypes(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseAddTypes(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseAddTypes method with an empty input, deserializing to an object of the specified class.

databaseAddTypes(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseAddTypes method with an empty input using the given environment, deserializing to an object of the specified class.

databaseAddTypes(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseAddTypes method with the given input, deserializing to an object of the specified class.

databaseAddTypes(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseAddTypes method with the given input using the given environment, deserializing to an object of the specified class.

databaseClose(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseClose(String, Class) instead and supply your own class to deserialize to.

databaseClose(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseClose(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseClose(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseClose(String, Object, Class) instead and supply your own class to deserialize to.

databaseClose(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseClose(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseClose(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseClose method with an empty input, deserializing to an object of the specified class.

databaseClose(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseClose method with an empty input using the given environment, deserializing to an object of the specified class.

databaseClose(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseClose method with the given input, deserializing to an object of the specified class.

databaseClose(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseClose method with the given input using the given environment, deserializing to an object of the specified class.

databaseDescribe(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseDescribe(String, Class) instead and supply your own class to deserialize to.

databaseDescribe(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseDescribe(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseDescribe(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseDescribe(String, Object, Class) instead and supply your own class to deserialize to.

databaseDescribe(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseDescribe(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseDescribe(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseDescribe method with an empty input, deserializing to an object of the specified class.

databaseDescribe(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseDescribe method with an empty input using the given environment, deserializing to an object of the specified class.

databaseDescribe(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseDescribe method with the given input, deserializing to an object of the specified class.

databaseDescribe(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseDescribe method with the given input using the given environment, deserializing to an object of the specified class.

databaseDownloadFile(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseDownloadFile(String, Class) instead and supply your own class to deserialize to.

databaseDownloadFile(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseDownloadFile(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseDownloadFile(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseDownloadFile(String, Object, Class) instead and supply your own class to deserialize to.

databaseDownloadFile(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseDownloadFile(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseDownloadFile(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseDownloadFile method with an empty input, deserializing to an object of the specified class.

databaseDownloadFile(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseDownloadFile method with an empty input using the given environment, deserializing to an object of the specified class.

databaseDownloadFile(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseDownloadFile method with the given input, deserializing to an object of the specified class.

databaseDownloadFile(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseDownloadFile method with the given input using the given environment, deserializing to an object of the specified class.

databaseGetDetails(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseGetDetails(String, Class) instead and supply your own class to deserialize to.

databaseGetDetails(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseGetDetails(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseGetDetails(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseGetDetails(String, Object, Class) instead and supply your own class to deserialize to.

databaseGetDetails(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseGetDetails(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseGetDetails(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseGetDetails method with an empty input, deserializing to an object of the specified class.

databaseGetDetails(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseGetDetails method with an empty input using the given environment, deserializing to an object of the specified class.

databaseGetDetails(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseGetDetails method with the given input, deserializing to an object of the specified class.

databaseGetDetails(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseGetDetails method with the given input using the given environment, deserializing to an object of the specified class.

databaseListFolder(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseListFolder(String, Class) instead and supply your own class to deserialize to.

databaseListFolder(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseListFolder(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseListFolder(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseListFolder(String, Object, Class) instead and supply your own class to deserialize to.

databaseListFolder(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseListFolder(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseListFolder(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseListFolder method with an empty input, deserializing to an object of the specified class.

databaseListFolder(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseListFolder method with an empty input using the given environment, deserializing to an object of the specified class.

databaseListFolder(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseListFolder method with the given input, deserializing to an object of the specified class.

databaseListFolder(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseListFolder method with the given input using the given environment, deserializing to an object of the specified class.

databaseListProjects(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseListProjects(String, Class) instead and supply your own class to deserialize to.

databaseListProjects(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseListProjects(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseListProjects(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseListProjects(String, Object, Class) instead and supply your own class to deserialize to.

databaseListProjects(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseListProjects(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseListProjects(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseListProjects method with an empty input, deserializing to an object of the specified class.

databaseListProjects(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseListProjects method with an empty input using the given environment, deserializing to an object of the specified class.

databaseListProjects(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseListProjects method with the given input, deserializing to an object of the specified class.

databaseListProjects(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseListProjects method with the given input using the given environment, deserializing to an object of the specified class.

databaseRelocate(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseRelocate(String, Class) instead and supply your own class to deserialize to.

databaseRelocate(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseRelocate(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseRelocate(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseRelocate(String, Object, Class) instead and supply your own class to deserialize to.

databaseRelocate(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseRelocate(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseRelocate(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseRelocate method with an empty input, deserializing to an object of the specified class.

databaseRelocate(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseRelocate method with an empty input using the given environment, deserializing to an object of the specified class.

databaseRelocate(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseRelocate method with the given input, deserializing to an object of the specified class.

databaseRelocate(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseRelocate method with the given input using the given environment, deserializing to an object of the specified class.

databaseRemoveTags(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseRemoveTags(String, Class) instead and supply your own class to deserialize to.

databaseRemoveTags(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseRemoveTags(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseRemoveTags(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseRemoveTags(String, Object, Class) instead and supply your own class to deserialize to.

databaseRemoveTags(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseRemoveTags(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseRemoveTags(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseRemoveTags method with an empty input, deserializing to an object of the specified class.

databaseRemoveTags(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseRemoveTags method with an empty input using the given environment, deserializing to an object of the specified class.

databaseRemoveTags(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseRemoveTags method with the given input, deserializing to an object of the specified class.

databaseRemoveTags(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseRemoveTags method with the given input using the given environment, deserializing to an object of the specified class.

databaseRemoveTypes(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseRemoveTypes(String, Class) instead and supply your own class to deserialize to.

databaseRemoveTypes(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseRemoveTypes(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseRemoveTypes(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseRemoveTypes(String, Object, Class) instead and supply your own class to deserialize to.

databaseRemoveTypes(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseRemoveTypes(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseRemoveTypes(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseRemoveTypes method with an empty input, deserializing to an object of the specified class.

databaseRemoveTypes(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseRemoveTypes method with an empty input using the given environment, deserializing to an object of the specified class.

databaseRemoveTypes(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseRemoveTypes method with the given input, deserializing to an object of the specified class.

databaseRemoveTypes(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseRemoveTypes method with the given input using the given environment, deserializing to an object of the specified class.

databaseRename(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseRename(String, Class) instead and supply your own class to deserialize to.

databaseRename(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseRename(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseRename(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseRename(String, Object, Class) instead and supply your own class to deserialize to.

databaseRename(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseRename(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseRename(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseRename method with an empty input, deserializing to an object of the specified class.

databaseRename(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseRename method with an empty input using the given environment, deserializing to an object of the specified class.

databaseRename(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseRename method with the given input, deserializing to an object of the specified class.

databaseRename(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseRename method with the given input using the given environment, deserializing to an object of the specified class.

databaseSetDetails(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseSetDetails(String, Class) instead and supply your own class to deserialize to.

databaseSetDetails(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseSetDetails(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseSetDetails(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseSetDetails(String, Object, Class) instead and supply your own class to deserialize to.

databaseSetDetails(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseSetDetails(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseSetDetails(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseSetDetails method with an empty input, deserializing to an object of the specified class.

databaseSetDetails(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseSetDetails method with an empty input using the given environment, deserializing to an object of the specified class.

databaseSetDetails(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseSetDetails method with the given input, deserializing to an object of the specified class.

databaseSetDetails(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseSetDetails method with the given input using the given environment, deserializing to an object of the specified class.

databaseSetProperties(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseSetProperties(String, Class) instead and supply your own class to deserialize to.

databaseSetProperties(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseSetProperties(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseSetProperties(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseSetProperties(String, Object, Class) instead and supply your own class to deserialize to.

databaseSetProperties(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseSetProperties(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseSetProperties(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseSetProperties method with an empty input, deserializing to an object of the specified class.

databaseSetProperties(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseSetProperties method with an empty input using the given environment, deserializing to an object of the specified class.

databaseSetProperties(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseSetProperties method with the given input, deserializing to an object of the specified class.

databaseSetProperties(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseSetProperties method with the given input using the given environment, deserializing to an object of the specified class.

databaseSetVisibility(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseSetVisibility(String, Class) instead and supply your own class to deserialize to.

databaseSetVisibility(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseSetVisibility(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseSetVisibility(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseSetVisibility(String, Object, Class) instead and supply your own class to deserialize to.

databaseSetVisibility(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.databaseSetVisibility(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

databaseSetVisibility(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseSetVisibility method with an empty input, deserializing to an object of the specified class.

databaseSetVisibility(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseSetVisibility method with an empty input using the given environment, deserializing to an object of the specified class.

databaseSetVisibility(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the databaseSetVisibility method with the given input, deserializing to an object of the specified class.

databaseSetVisibility(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the databaseSetVisibility method with the given input using the given environment, deserializing to an object of the specified class.

DataObjectState - Enum in com.dnanexus

The state of a data object.

dbclusterAddTags(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterAddTags(String, Class) instead and supply your own class to deserialize to.

dbclusterAddTags(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterAddTags(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterAddTags(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterAddTags(String, Object, Class) instead and supply your own class to deserialize to.

dbclusterAddTags(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterAddTags(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterAddTags(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterAddTags method with an empty input, deserializing to an object of the specified class.

dbclusterAddTags(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterAddTags method with an empty input using the given environment, deserializing to an object of the specified class.

dbclusterAddTags(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterAddTags method with the given input, deserializing to an object of the specified class.

dbclusterAddTags(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterAddTags method with the given input using the given environment, deserializing to an object of the specified class.

dbclusterAddTypes(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterAddTypes(String, Class) instead and supply your own class to deserialize to.

dbclusterAddTypes(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterAddTypes(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterAddTypes(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterAddTypes(String, Object, Class) instead and supply your own class to deserialize to.

dbclusterAddTypes(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterAddTypes(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterAddTypes(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterAddTypes method with an empty input, deserializing to an object of the specified class.

dbclusterAddTypes(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterAddTypes method with an empty input using the given environment, deserializing to an object of the specified class.

dbclusterAddTypes(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterAddTypes method with the given input, deserializing to an object of the specified class.

dbclusterAddTypes(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterAddTypes method with the given input using the given environment, deserializing to an object of the specified class.

dbclusterDescribe(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterDescribe(String, Class) instead and supply your own class to deserialize to.

dbclusterDescribe(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterDescribe(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterDescribe(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterDescribe(String, Object, Class) instead and supply your own class to deserialize to.

dbclusterDescribe(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterDescribe(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterDescribe(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterDescribe method with an empty input, deserializing to an object of the specified class.

dbclusterDescribe(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterDescribe method with an empty input using the given environment, deserializing to an object of the specified class.

dbclusterDescribe(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterDescribe method with the given input, deserializing to an object of the specified class.

dbclusterDescribe(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterDescribe method with the given input using the given environment, deserializing to an object of the specified class.

dbclusterGetDetails(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterGetDetails(String, Class) instead and supply your own class to deserialize to.

dbclusterGetDetails(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterGetDetails(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterGetDetails(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterGetDetails(String, Object, Class) instead and supply your own class to deserialize to.

dbclusterGetDetails(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterGetDetails(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterGetDetails(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterGetDetails method with an empty input, deserializing to an object of the specified class.

dbclusterGetDetails(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterGetDetails method with an empty input using the given environment, deserializing to an object of the specified class.

dbclusterGetDetails(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterGetDetails method with the given input, deserializing to an object of the specified class.

dbclusterGetDetails(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterGetDetails method with the given input using the given environment, deserializing to an object of the specified class.

dbclusterNew() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterNew(Class) instead and supply your own class to deserialize to.

dbclusterNew(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterNew(Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterNew(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterNew(Object, Class) instead and supply your own class to deserialize to.

dbclusterNew(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterNew(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterNew(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterNew method with an empty input, deserializing to an object of the specified class.

dbclusterNew(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterNew method with an empty input using the specified environment, deserializing to an object of the specified class.

dbclusterNew(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterNew method with the specified input, deserializing to an object of the specified class.

dbclusterNew(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterNew method with the specified input using the specified environment, deserializing to an object of the specified class.

dbclusterRemoveTags(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterRemoveTags(String, Class) instead and supply your own class to deserialize to.

dbclusterRemoveTags(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterRemoveTags(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterRemoveTags(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterRemoveTags(String, Object, Class) instead and supply your own class to deserialize to.

dbclusterRemoveTags(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterRemoveTags(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterRemoveTags(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterRemoveTags method with an empty input, deserializing to an object of the specified class.

dbclusterRemoveTags(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterRemoveTags method with an empty input using the given environment, deserializing to an object of the specified class.

dbclusterRemoveTags(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterRemoveTags method with the given input, deserializing to an object of the specified class.

dbclusterRemoveTags(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterRemoveTags method with the given input using the given environment, deserializing to an object of the specified class.

dbclusterRemoveTypes(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterRemoveTypes(String, Class) instead and supply your own class to deserialize to.

dbclusterRemoveTypes(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterRemoveTypes(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterRemoveTypes(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterRemoveTypes(String, Object, Class) instead and supply your own class to deserialize to.

dbclusterRemoveTypes(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterRemoveTypes(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterRemoveTypes(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterRemoveTypes method with an empty input, deserializing to an object of the specified class.

dbclusterRemoveTypes(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterRemoveTypes method with an empty input using the given environment, deserializing to an object of the specified class.

dbclusterRemoveTypes(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterRemoveTypes method with the given input, deserializing to an object of the specified class.

dbclusterRemoveTypes(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterRemoveTypes method with the given input using the given environment, deserializing to an object of the specified class.

dbclusterRename(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterRename(String, Class) instead and supply your own class to deserialize to.

dbclusterRename(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterRename(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterRename(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterRename(String, Object, Class) instead and supply your own class to deserialize to.

dbclusterRename(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterRename(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterRename(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterRename method with an empty input, deserializing to an object of the specified class.

dbclusterRename(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterRename method with an empty input using the given environment, deserializing to an object of the specified class.

dbclusterRename(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterRename method with the given input, deserializing to an object of the specified class.

dbclusterRename(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterRename method with the given input using the given environment, deserializing to an object of the specified class.

dbclusterSetDetails(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterSetDetails(String, Class) instead and supply your own class to deserialize to.

dbclusterSetDetails(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterSetDetails(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterSetDetails(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterSetDetails(String, Object, Class) instead and supply your own class to deserialize to.

dbclusterSetDetails(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterSetDetails(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterSetDetails(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterSetDetails method with an empty input, deserializing to an object of the specified class.

dbclusterSetDetails(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterSetDetails method with an empty input using the given environment, deserializing to an object of the specified class.

dbclusterSetDetails(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterSetDetails method with the given input, deserializing to an object of the specified class.

dbclusterSetDetails(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterSetDetails method with the given input using the given environment, deserializing to an object of the specified class.

dbclusterSetProperties(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterSetProperties(String, Class) instead and supply your own class to deserialize to.

dbclusterSetProperties(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterSetProperties(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterSetProperties(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterSetProperties(String, Object, Class) instead and supply your own class to deserialize to.

dbclusterSetProperties(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterSetProperties(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterSetProperties(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterSetProperties method with an empty input, deserializing to an object of the specified class.

dbclusterSetProperties(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterSetProperties method with an empty input using the given environment, deserializing to an object of the specified class.

dbclusterSetProperties(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterSetProperties method with the given input, deserializing to an object of the specified class.

dbclusterSetProperties(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterSetProperties method with the given input using the given environment, deserializing to an object of the specified class.

dbclusterSetVisibility(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterSetVisibility(String, Class) instead and supply your own class to deserialize to.

dbclusterSetVisibility(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterSetVisibility(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterSetVisibility(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterSetVisibility(String, Object, Class) instead and supply your own class to deserialize to.

dbclusterSetVisibility(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterSetVisibility(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterSetVisibility(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterSetVisibility method with an empty input, deserializing to an object of the specified class.

dbclusterSetVisibility(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterSetVisibility method with an empty input using the given environment, deserializing to an object of the specified class.

dbclusterSetVisibility(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterSetVisibility method with the given input, deserializing to an object of the specified class.

dbclusterSetVisibility(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterSetVisibility method with the given input using the given environment, deserializing to an object of the specified class.

dbclusterStart(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterStart(String, Class) instead and supply your own class to deserialize to.

dbclusterStart(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterStart(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterStart(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterStart(String, Object, Class) instead and supply your own class to deserialize to.

dbclusterStart(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterStart(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterStart(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterStart method with an empty input, deserializing to an object of the specified class.

dbclusterStart(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterStart method with an empty input using the given environment, deserializing to an object of the specified class.

dbclusterStart(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterStart method with the given input, deserializing to an object of the specified class.

dbclusterStart(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterStart method with the given input using the given environment, deserializing to an object of the specified class.

dbclusterStop(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterStop(String, Class) instead and supply your own class to deserialize to.

dbclusterStop(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterStop(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterStop(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterStop(String, Object, Class) instead and supply your own class to deserialize to.

dbclusterStop(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterStop(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterStop(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterStop method with an empty input, deserializing to an object of the specified class.

dbclusterStop(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterStop method with an empty input using the given environment, deserializing to an object of the specified class.

dbclusterStop(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterStop method with the given input, deserializing to an object of the specified class.

dbclusterStop(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterStop method with the given input using the given environment, deserializing to an object of the specified class.

dbclusterTerminate(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterTerminate(String, Class) instead and supply your own class to deserialize to.

dbclusterTerminate(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterTerminate(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterTerminate(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterTerminate(String, Object, Class) instead and supply your own class to deserialize to.

dbclusterTerminate(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.dbclusterTerminate(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

dbclusterTerminate(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterTerminate method with an empty input, deserializing to an object of the specified class.

dbclusterTerminate(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterTerminate method with an empty input using the given environment, deserializing to an object of the specified class.

dbclusterTerminate(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterTerminate method with the given input, deserializing to an object of the specified class.

dbclusterTerminate(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the dbclusterTerminate method with the given input using the given environment, deserializing to an object of the specified class.

DEBUG_HOLD - com.dnanexus.JobState

delayWorkspaceDestruction - Variable in class com.dnanexus.DXExecution.DescribeResponseHash

delayWorkspaceDestruction() - Method in class com.dnanexus.ExecutableRunner

Delays the destruction of the workspace of the resulting job so it can be examined for debugging.

dependsOn(DXDataObject) - Method in class com.dnanexus.ExecutableRunner

Makes the resulting execution depend on the specified data object, so that the execution will not begin until the data object is closed.

dependsOn(DXExecution) - Method in class com.dnanexus.ExecutableRunner

Makes the resulting execution depend on the specified execution, so that the former will not begin until the latter has successfully completed.

DESCENDING - com.dnanexus.DXSearch.Ordering

Search for only hidden items.

describe() - Method in class com.dnanexus.DXAnalysis

describe() - Method in class com.dnanexus.DXApplet

describe() - Method in class com.dnanexus.DXDataObject

Returns metadata about the data object.

describe() - Method in class com.dnanexus.DXExecution

Obtains metadata about the execution.

describe() - Method in class com.dnanexus.DXFile

describe() - Method in class com.dnanexus.DXJob

describe() - Method in class com.dnanexus.DXProject

Returns metadata about the project.

describe() - Method in class com.dnanexus.DXRecord

describe() - Method in class com.dnanexus.DXWorkflow

describe(DXDataObject.DescribeOptions) - Method in class com.dnanexus.DXApplet

describe(DXDataObject.DescribeOptions) - Method in class com.dnanexus.DXDataObject

Returns metadata about the data object, specifying which optional fields are to be returned and what project to obtain project-specific metadata from.

describe(DXDataObject.DescribeOptions) - Method in class com.dnanexus.DXFile

describe(DXDataObject.DescribeOptions) - Method in class com.dnanexus.DXRecord

describe(DXDataObject.DescribeOptions) - Method in class com.dnanexus.DXWorkflow

Describe() - Constructor for class com.dnanexus.DXDataObject.Describe

Creates a Describe object with all empty metadata.

DescribeResponseHash() - Constructor for class com.dnanexus.DXExecution.DescribeResponseHash

destroy() - Method in class com.dnanexus.DXProject

Destroys the project and all its contents.

destroy(boolean) - Method in class com.dnanexus.DXProject

Destroys the project and all its contents, optionally terminating all running jobs.

details - Variable in class com.dnanexus.DXDataObject.Builder

details - Variable in class com.dnanexus.DXExecution.DescribeResponseHash

disableRetry() - Method in class com.dnanexus.DXEnvironment.Builder

Disables automatic retry of HTTP requests.

DONE - com.dnanexus.AnalysisState

DONE - com.dnanexus.JobState

downloadBytes() - Method in class com.dnanexus.DXFile

Downloads the entire file into a byte array.

downloadBytes(long, long) - Method in class com.dnanexus.DXFile

Downloads the specified byte range of the file into a byte array.

downloadToOutputStream(OutputStream) - Method in class com.dnanexus.DXFile

Downloads the entire file and writes the data to an OutputStream.

downloadToOutputStream(OutputStream, long, long) - Method in class com.dnanexus.DXFile

Downloads the specified byte range of the file into an OutputStream.

DXAnalysis - Class in com.dnanexus

An analysis object (a specific instantiation of a workflow).

DXAnalysis.Describe - Class in com.dnanexus

Contains metadata about an analysis.

DXAPI - Class in com.dnanexus

Utility class containing low-level wrappers for invoking DNAnexus API methods.

DXAPIException - Exception in com.dnanexus.exceptions

Represents any response from the API server other than HTTP code 200 (OK).

DXAPIException(String, int) - Constructor for exception com.dnanexus.exceptions.DXAPIException

Initializes a new exception with the specified message and HTTP status code.

DXApplet - Class in com.dnanexus

An applet (an executable data object).

DXApplet.Builder - Class in com.dnanexus

Builder class for creating a new DXApplet object.

DXApplet.Describe - Class in com.dnanexus

Contains metadata for an applet.

DXContainer - Class in com.dnanexus

A container (a logical collection for storage and organization of data).

DXContainer.FolderContents - Class in com.dnanexus

Represents the contents of a folder.

DXDataObject - Class in com.dnanexus

Base class for all data object classes in the DNAnexus Platform.

DXDataObject(String, String, DXContainer, DXEnvironment, JsonNode) - Constructor for class com.dnanexus.DXDataObject

Initializes the DXDataObject to point to the object with the specified ID in the specified project.

DXDataObject(String, String, DXEnvironment, JsonNode) - Constructor for class com.dnanexus.DXDataObject

Initializes the DXDataObject to point to the object with the specified ID in the environment's workspace.

DXDataObject.Builder<T extends DXDataObject.Builder<T,U>,U extends DXDataObject> - Class in com.dnanexus

Abstract builder class for creating a new data object of class U.

DXDataObject.Describe - Class in com.dnanexus

Contains metadata for a data object (fields common to all data objects).

DXDataObject.DescribeOptions - Class in com.dnanexus

Configuration options for a describe call on a data object (e.g. DXDataObject.describe(DescribeOptions)) to control what optional fields get returned and what project to obtain project-specific metadata from.

DXEnvironment - Class in com.dnanexus

Immutable class storing configuration for selecting, authenticating to, and communicating with a DNAnexus API server.

DXEnvironment.Builder - Class in com.dnanexus

Builder class for creating DXEnvironment objects.

DXEnvironment.ProxyDesc - Class in com.dnanexus

DXExecutable<T extends DXExecution> - Interface in com.dnanexus

An executable (applet, app, or workflow).

DXExecution - Class in com.dnanexus

An execution (job or analysis).

DXExecution(String, String, DXEnvironment) - Constructor for class com.dnanexus.DXExecution

Initializes a new execution with the specified execution ID and environment.

DXExecution(String, String, DXEnvironment, JsonNode) - Constructor for class com.dnanexus.DXExecution

Initializes a new execution with the specified execution ID, environment, and cached describe data.

DXExecution.Describe - Class in com.dnanexus

Contains metadata about an execution.

DXExecution.DescribeResponseHash - Class in com.dnanexus

Deserialized output from the /analysis-xxxx/describe or /job-xxxx/describe route (fields common to all executions only).

DXFile - Class in com.dnanexus

A file (an opaque sequence of bytes).

DXFile.Builder - Class in com.dnanexus

Builder class for creating a new DXFile object.

DXFile.Describe - Class in com.dnanexus

Contains metadata for a file.

DXHTTPException - Exception in com.dnanexus.exceptions

Represents an error encountered while making an HTTP request or parsing its results.

DXHTTPException() - Constructor for exception com.dnanexus.exceptions.DXHTTPException

Initializes a new DXHTTPException.

DXHTTPException(Throwable) - Constructor for exception com.dnanexus.exceptions.DXHTTPException

Initializes a new DXHTTPException with the specified cause.

DXHTTPRequest - Class in com.dnanexus

Class for making a raw DNAnexus API call via HTTP.

DXHTTPRequest() - Constructor for class com.dnanexus.DXHTTPRequest

Construct the DXHTTPRequest using the default DXEnvironment.

DXHTTPRequest(DXEnvironment) - Constructor for class com.dnanexus.DXHTTPRequest

Construct the DXHTTPRequest using the given DXEnvironment.

DXHTTPRequest.RetryStrategy - Enum in com.dnanexus

Indicates whether a particular API request can be retried.

dxId - Variable in class com.dnanexus.DXObject

The ID of this object (this is the base for URLs used in API calls, /object-id/verb).

DXJob - Class in com.dnanexus

A job object (a specific instantiation of an app or applet).

DXJob.Describe - Class in com.dnanexus

Contains metadata about a job.

DXJob.StateTransition - Class in com.dnanexus

A event where a job transitioned from one state to another.

DXJSON - Class in com.dnanexus

Utility class for working with JSON objects.

DXJSON.ArrayBuilder - Class in com.dnanexus

Builder class that generates a JSON array.

DXJSON.ObjectBuilder - Class in com.dnanexus

Builder class that generates a JSON object (hash).

DXObject - Class in com.dnanexus

Base class for all objects in the DNAnexus Platform.

DXObject(String, String, DXEnvironment) - Constructor for class com.dnanexus.DXObject

Creates a new object with the specified ID and environment.

DXProject - Class in com.dnanexus

A project (a container providing features for data sharing and collaboration).

DXProject.ArchiveRequestBuilder - Class in com.dnanexus

Builder for archive requests.

DXProject.ArchiveResults - Class in com.dnanexus

Results of archive request.

DXProject.Builder - Class in com.dnanexus

Builder class for creating a new DXProject object.

DXProject.Describe - Class in com.dnanexus

Contains metadata for a project.

DXProject.UnarchiveRequestBuilder - Class in com.dnanexus

Builder for unarchive requests.

DXProject.UnarchiveResults - Class in com.dnanexus

Results of unarchive request.

DXRecord - Class in com.dnanexus

A record (the minimal data object class).

DXRecord.Builder - Class in com.dnanexus

Builder class for creating a new DXRecord object.

DXRecord.Describe - Class in com.dnanexus

Contains metadata for a record.

DXSearch - Class in com.dnanexus

Utility class containing methods for searching for platform objects by various criteria.

DXSearch.FindDataObjectsRequestBuilder<T extends DXDataObject> - Class in com.dnanexus

Builder class for formulating findDataObjects queries and executing them.

DXSearch.FindDataObjectsResult<T extends DXDataObject> - Class in com.dnanexus

The set of data objects that matched a findDataObjects query.

DXSearch.FindExecutionsRequestBuilder<T extends DXExecution> - Class in com.dnanexus

Builder class for formulating findExecutions queries and executing them.

DXSearch.FindExecutionsResult<T extends DXExecution> - Class in com.dnanexus

The set of executions that matched a findExecutions query.

DXSearch.FindResultPage<T> - Interface in com.dnanexus

Represents a single page of results for a find route.

DXSearch.ObjectProducer<T extends DXObject> - Interface in com.dnanexus

Interface that provides streaming or buffered access to a sequence of DXObjects.

DXSearch.Ordering - Enum in com.dnanexus

Specifies in a query whether to return visible items, hidden items, or both.

DXSearch.PropertiesQuery - Class in com.dnanexus

A query for objects (data objects, executions, or projects) with specified properties.

DXSearch.TagsQuery - Class in com.dnanexus

A query for objects (data objects, executions, or projects) with specified tags.

DXSearch.TypeQuery - Class in com.dnanexus

A query for data objects with specified types.

DXSearch.VisibilityQuery - Enum in com.dnanexus

Specifies in a query whether to return visible items, hidden items, or both.

DXUtil - Class in com.dnanexus

Utility class for handling job input and output.

DXUtil() - Constructor for class com.dnanexus.DXUtil

DXWorkflow - Class in com.dnanexus

A workflow.

DXWorkflow.Builder - Class in com.dnanexus

Builder class for creating a new DXWorkflow object.

DXWorkflow.Describe - Class in com.dnanexus

Contains metadata for a workflow.

DXWorkflow.Modification<T> - Class in com.dnanexus

Represents the result of a workflow-modifying operation, along with the workflow's edit version after that operation.

DXWorkflow.Stage - Class in com.dnanexus

A workflow stage.

E

EITHER - com.dnanexus.DXSearch.VisibilityQuery

Search for both hidden and visible items.

env - Variable in class com.dnanexus.DXDataObject.Builder

env - Variable in class com.dnanexus.DXExecution.Describe

env - Variable in class com.dnanexus.DXObject

Environment object to use for API calls.

env - Variable in class com.dnanexus.ExecutableRunner

equals(Object) - Method in class com.dnanexus.DXDataObject

equals(Object) - Method in class com.dnanexus.DXJob.StateTransition

equals(Object) - Method in class com.dnanexus.DXObject

equals(Object) - Method in class com.dnanexus.NonNullJsonNodeFilter

executableId - Variable in class com.dnanexus.ExecutableRunner

executableName - Variable in class com.dnanexus.DXExecution.DescribeResponseHash

ExecutableRunner<T extends DXExecution> - Class in com.dnanexus

Collects parameters for a new run of an executable.

execute() - Method in class com.dnanexus.DXProject.ArchiveRequestBuilder

Executes the request.

execute() - Method in class com.dnanexus.DXProject.UnarchiveRequestBuilder

Executes the request.

execute() - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Executes the query.

execute() - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Executes the query.

execute(int) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Executes the query with the specified page size.

execute(int) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Executes the query with the specified page size.

EXPEDITED - com.dnanexus.UnarchivingRate

F

FAILED - com.dnanexus.AnalysisState

FAILED - com.dnanexus.JobState

FILE - com.dnanexus.IOClass

fileAddTags(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileAddTags(String, Class) instead and supply your own class to deserialize to.

fileAddTags(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileAddTags(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileAddTags(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileAddTags(String, Object, Class) instead and supply your own class to deserialize to.

fileAddTags(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileAddTags(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileAddTags(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileAddTags method with an empty input, deserializing to an object of the specified class.

fileAddTags(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileAddTags method with an empty input using the given environment, deserializing to an object of the specified class.

fileAddTags(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileAddTags method with the given input, deserializing to an object of the specified class.

fileAddTags(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileAddTags method with the given input using the given environment, deserializing to an object of the specified class.

fileAddTypes(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileAddTypes(String, Class) instead and supply your own class to deserialize to.

fileAddTypes(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileAddTypes(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileAddTypes(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileAddTypes(String, Object, Class) instead and supply your own class to deserialize to.

fileAddTypes(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileAddTypes(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileAddTypes(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileAddTypes method with an empty input, deserializing to an object of the specified class.

fileAddTypes(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileAddTypes method with an empty input using the given environment, deserializing to an object of the specified class.

fileAddTypes(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileAddTypes method with the given input, deserializing to an object of the specified class.

fileAddTypes(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileAddTypes method with the given input using the given environment, deserializing to an object of the specified class.

fileClose(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileClose(String, Class) instead and supply your own class to deserialize to.

fileClose(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileClose(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileClose(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileClose(String, Object, Class) instead and supply your own class to deserialize to.

fileClose(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileClose(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileClose(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileClose method with an empty input, deserializing to an object of the specified class.

fileClose(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileClose method with an empty input using the given environment, deserializing to an object of the specified class.

fileClose(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileClose method with the given input, deserializing to an object of the specified class.

fileClose(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileClose method with the given input using the given environment, deserializing to an object of the specified class.

fileDescribe(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileDescribe(String, Class) instead and supply your own class to deserialize to.

fileDescribe(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileDescribe(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileDescribe(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileDescribe(String, Object, Class) instead and supply your own class to deserialize to.

fileDescribe(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileDescribe(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileDescribe(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileDescribe method with an empty input, deserializing to an object of the specified class.

fileDescribe(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileDescribe method with an empty input using the given environment, deserializing to an object of the specified class.

fileDescribe(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileDescribe method with the given input, deserializing to an object of the specified class.

fileDescribe(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileDescribe method with the given input using the given environment, deserializing to an object of the specified class.

fileDownload(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileDownload(String, Class) instead and supply your own class to deserialize to.

fileDownload(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileDownload(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileDownload(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileDownload(String, Object, Class) instead and supply your own class to deserialize to.

fileDownload(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileDownload(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileDownload(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileDownload method with an empty input, deserializing to an object of the specified class.

fileDownload(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileDownload method with an empty input using the given environment, deserializing to an object of the specified class.

fileDownload(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileDownload method with the given input, deserializing to an object of the specified class.

fileDownload(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileDownload method with the given input using the given environment, deserializing to an object of the specified class.

fileGetDetails(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileGetDetails(String, Class) instead and supply your own class to deserialize to.

fileGetDetails(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileGetDetails(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileGetDetails(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileGetDetails(String, Object, Class) instead and supply your own class to deserialize to.

fileGetDetails(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileGetDetails(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileGetDetails(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileGetDetails method with an empty input, deserializing to an object of the specified class.

fileGetDetails(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileGetDetails method with an empty input using the given environment, deserializing to an object of the specified class.

fileGetDetails(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileGetDetails method with the given input, deserializing to an object of the specified class.

fileGetDetails(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileGetDetails method with the given input using the given environment, deserializing to an object of the specified class.

fileListProjects(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileListProjects(String, Class) instead and supply your own class to deserialize to.

fileListProjects(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileListProjects(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileListProjects(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileListProjects(String, Object, Class) instead and supply your own class to deserialize to.

fileListProjects(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileListProjects(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileListProjects(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileListProjects method with an empty input, deserializing to an object of the specified class.

fileListProjects(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileListProjects method with an empty input using the given environment, deserializing to an object of the specified class.

fileListProjects(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileListProjects method with the given input, deserializing to an object of the specified class.

fileListProjects(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileListProjects method with the given input using the given environment, deserializing to an object of the specified class.

fileNew() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileNew(Class) instead and supply your own class to deserialize to.

fileNew(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileNew(Class, DXEnvironment) instead and supply your own class to deserialize to.

fileNew(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileNew(Object, Class) instead and supply your own class to deserialize to.

fileNew(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileNew(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileNew(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileNew method with an empty input, deserializing to an object of the specified class.

fileNew(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileNew method with an empty input using the specified environment, deserializing to an object of the specified class.

fileNew(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileNew method with the specified input, deserializing to an object of the specified class.

fileNew(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileNew method with the specified input using the specified environment, deserializing to an object of the specified class.

fileRemoveTags(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileRemoveTags(String, Class) instead and supply your own class to deserialize to.

fileRemoveTags(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileRemoveTags(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileRemoveTags(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileRemoveTags(String, Object, Class) instead and supply your own class to deserialize to.

fileRemoveTags(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileRemoveTags(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileRemoveTags(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileRemoveTags method with an empty input, deserializing to an object of the specified class.

fileRemoveTags(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileRemoveTags method with an empty input using the given environment, deserializing to an object of the specified class.

fileRemoveTags(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileRemoveTags method with the given input, deserializing to an object of the specified class.

fileRemoveTags(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileRemoveTags method with the given input using the given environment, deserializing to an object of the specified class.

fileRemoveTypes(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileRemoveTypes(String, Class) instead and supply your own class to deserialize to.

fileRemoveTypes(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileRemoveTypes(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileRemoveTypes(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileRemoveTypes(String, Object, Class) instead and supply your own class to deserialize to.

fileRemoveTypes(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileRemoveTypes(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileRemoveTypes(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileRemoveTypes method with an empty input, deserializing to an object of the specified class.

fileRemoveTypes(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileRemoveTypes method with an empty input using the given environment, deserializing to an object of the specified class.

fileRemoveTypes(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileRemoveTypes method with the given input, deserializing to an object of the specified class.

fileRemoveTypes(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileRemoveTypes method with the given input using the given environment, deserializing to an object of the specified class.

fileRename(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileRename(String, Class) instead and supply your own class to deserialize to.

fileRename(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileRename(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileRename(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileRename(String, Object, Class) instead and supply your own class to deserialize to.

fileRename(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileRename(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileRename(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileRename method with an empty input, deserializing to an object of the specified class.

fileRename(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileRename method with an empty input using the given environment, deserializing to an object of the specified class.

fileRename(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileRename method with the given input, deserializing to an object of the specified class.

fileRename(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileRename method with the given input using the given environment, deserializing to an object of the specified class.

fileSetDetails(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileSetDetails(String, Class) instead and supply your own class to deserialize to.

fileSetDetails(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileSetDetails(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileSetDetails(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileSetDetails(String, Object, Class) instead and supply your own class to deserialize to.

fileSetDetails(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileSetDetails(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileSetDetails(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileSetDetails method with an empty input, deserializing to an object of the specified class.

fileSetDetails(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileSetDetails method with an empty input using the given environment, deserializing to an object of the specified class.

fileSetDetails(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileSetDetails method with the given input, deserializing to an object of the specified class.

fileSetDetails(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileSetDetails method with the given input using the given environment, deserializing to an object of the specified class.

fileSetProperties(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileSetProperties(String, Class) instead and supply your own class to deserialize to.

fileSetProperties(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileSetProperties(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileSetProperties(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileSetProperties(String, Object, Class) instead and supply your own class to deserialize to.

fileSetProperties(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileSetProperties(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileSetProperties(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileSetProperties method with an empty input, deserializing to an object of the specified class.

fileSetProperties(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileSetProperties method with an empty input using the given environment, deserializing to an object of the specified class.

fileSetProperties(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileSetProperties method with the given input, deserializing to an object of the specified class.

fileSetProperties(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileSetProperties method with the given input using the given environment, deserializing to an object of the specified class.

fileSetVisibility(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileSetVisibility(String, Class) instead and supply your own class to deserialize to.

fileSetVisibility(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileSetVisibility(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileSetVisibility(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileSetVisibility(String, Object, Class) instead and supply your own class to deserialize to.

fileSetVisibility(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileSetVisibility(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileSetVisibility(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileSetVisibility method with an empty input, deserializing to an object of the specified class.

fileSetVisibility(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileSetVisibility method with an empty input using the given environment, deserializing to an object of the specified class.

fileSetVisibility(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileSetVisibility method with the given input, deserializing to an object of the specified class.

fileSetVisibility(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileSetVisibility method with the given input using the given environment, deserializing to an object of the specified class.

fileUpload(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileUpload(String, Class) instead and supply your own class to deserialize to.

fileUpload(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileUpload(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileUpload(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileUpload(String, Object, Class) instead and supply your own class to deserialize to.

fileUpload(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.fileUpload(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

fileUpload(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileUpload method with an empty input, deserializing to an object of the specified class.

fileUpload(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileUpload method with an empty input using the given environment, deserializing to an object of the specified class.

fileUpload(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the fileUpload method with the given input, deserializing to an object of the specified class.

fileUpload(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the fileUpload method with the given input using the given environment, deserializing to an object of the specified class.

findDataObjects() - Static method in class com.dnanexus.DXSearch

Returns a builder object for finding data objects that match certain criteria.

findDataObjectsWithEnvironment(DXEnvironment) - Static method in class com.dnanexus.DXSearch

Returns a builder object for finding data objects that match certain criteria, using the specified environment.

findExecutions() - Static method in class com.dnanexus.DXSearch

Returns a builder object for finding executions (jobs or analyses) that match certain criteria.

findExecutionsWithEnvironment(DXEnvironment) - Static method in class com.dnanexus.DXSearch

Returns a builder object for finding executions that match certain criteria, using the specified environment.

findJobs() - Static method in class com.dnanexus.DXSearch

Deprecated.

Use DXSearch.findExecutions() in conjunction with DXSearch.FindExecutionsRequestBuilder.withClassJob() instead.

findJobsWithEnvironment(DXEnvironment) - Static method in class com.dnanexus.DXSearch

Deprecated.

Use DXSearch.findExecutionsWithEnvironment(DXEnvironment) in conjunction with DXSearch.FindExecutionsRequestBuilder.withClassJob() instead.

FLOAT - com.dnanexus.IOClass

folder - Variable in class com.dnanexus.DXDataObject.Builder

folder - Variable in class com.dnanexus.DXExecution.DescribeResponseHash

fromDefaults() - Static method in class com.dnanexus.DXEnvironment.Builder

Creates a Builder object using the JSON config in the file ~/.dnanexus_config/environment.json.

fromEnvironment(DXEnvironment) - Static method in class com.dnanexus.DXEnvironment.Builder

Creates a Builder object with initial settings copied from the specified environment.

fromFile(File) - Static method in class com.dnanexus.DXEnvironment.Builder

Creates a Builder object using the JSON config in the specified file.

G

get() - Static method in class com.dnanexus.DXDataObject.DescribeOptions

Returns a default instance of DescribeOptions that returns no optional fields and selects the project arbitrarily.

getAnalysis() - Method in class com.dnanexus.DXExecution.Describe

Returns the analysis that this execution was run as a stage of, or null if this execution was not run as a stage in an analysis.

getApiserverPath() - Method in class com.dnanexus.DXEnvironment

Returns the fully qualified API server address (including protocol, host, and port).

getApplet() - Method in class com.dnanexus.DXJob.Describe

Returns the applet of the job if it is running an applet, or null otherwise.

getArchivalState() - Method in class com.dnanexus.DXFile.Describe

Returns the archival state of the file.

getArrayBuilder() - Static method in class com.dnanexus.DXJSON

Creates a new ArrayBuilder, initialized to produce an empty array.

getBillTo() - Method in class com.dnanexus.DXExecution.Describe

Returns the user or organization that this execution was billed to.

getCachedDescribe() - Method in class com.dnanexus.DXAnalysis

getCachedDescribe() - Method in class com.dnanexus.DXApplet

getCachedDescribe() - Method in class com.dnanexus.DXDataObject

Returns metadata about the data object, like DXDataObject.describe(), but without making an API call.

getCachedDescribe() - Method in class com.dnanexus.DXExecution

Returns metadata about the data object, like DXExecution.describe(), but without making an API call.

getCachedDescribe() - Method in class com.dnanexus.DXFile

getCachedDescribe() - Method in class com.dnanexus.DXJob

getCachedDescribe() - Method in class com.dnanexus.DXRecord

getCachedDescribe() - Method in class com.dnanexus.DXWorkflow

getChunkSize(int) - Method in class com.dnanexus.DXFile.Describe

Returns the size the specified file part in bytes.

getCode() - Method in class com.dnanexus.RunSpecification

Returns the entry point code for the applet.

getConnectionTimeout() - Method in class com.dnanexus.DXEnvironment

Returns connection read timeout for http client

getCost() - Method in class com.dnanexus.DXProject.UnarchiveResults

Returns total cost (in millidollars) that will be charged for the unarchival request.

getCount() - Method in class com.dnanexus.DXProject.ArchiveResults

Returns number of files tagged for archival.

getCreationDate() - Method in class com.dnanexus.DXDataObject.Describe

Returns the creation date of the object.

getCreationDate() - Method in class com.dnanexus.DXExecution.Describe

Returns the date at which the execution was created.

getDescription() - Method in class com.dnanexus.DXApplet.Describe

Returns the applet description.

getDetails(Class<T>) - Method in class com.dnanexus.DXDataObject.Describe

Returns the details of the object.

getDetails(Class<T>) - Method in class com.dnanexus.DXExecution.Describe

Returns the details (user-suppled metadata) of the execution, deserialized to the specified class.

getDistribution() - Method in class com.dnanexus.RunSpecification

Returns the distribution for the applet.

getDownloadStream() - Method in class com.dnanexus.DXFile

Returns a stream of the file's contents.

getDownloadStream(long, long) - Method in class com.dnanexus.DXFile

Returns a stream of the specified byte range of the file's contents.

getDXAPIVersion() - Method in class com.dnanexus.DXApplet.Describe

Returns the API version that the applet code is to run under.

getEditVersion() - Method in class com.dnanexus.DXWorkflow.Modification

getExecutableName() - Method in class com.dnanexus.DXExecution.Describe

Returns the name of the executable that was run to create this execution.

getFailureCounts() - Method in class com.dnanexus.DXJob.Describe

A mapping from failure types to the number of times that type occurred and caused the job to be restarted before the job try being described.

getFailureMessage() - Method in class com.dnanexus.DXJob.Describe

Returns a detailed message describing why the job failed, or null if the job is not in a failing or failed state.

getFailureReason() - Method in class com.dnanexus.DXJob.Describe

Returns a short String describing why the job failed, or null if the job is not in a failing or failed state.

getFilePartsList() - Method in class com.dnanexus.DXFile.Describe

Returns a list of indices corresponding to parts of the file

getFiles() - Method in class com.dnanexus.DXProject.UnarchiveResults

Returns the number of files that will be unarchived.

getFirstPage(int) - Method in class com.dnanexus.DXSearch.FindDataObjectsResult

Returns a first page of the findDataObjects results.

getFolder() - Method in class com.dnanexus.DXDataObject.Describe

Returns the folder that contains the object.

getFolder() - Method in class com.dnanexus.DXExecution.Describe

Returns the output folder of the execution.

getFunction() - Method in class com.dnanexus.DXJob.Describe

Returns the name of the function (entry point) that the job is running.

getHttpClient() - Method in class com.dnanexus.DXHTTPRequest

Allows custom DXHTTPRequest to setup overridden httpClient

getHttpContext() - Method in class com.dnanexus.DXHTTPRequest

Allows custom HttpContext to setup overridden http.

getId() - Method in interface com.dnanexus.DXExecutable

Returns the ID of the object.

getId() - Method in class com.dnanexus.DXExecution.Describe

Returns the ID of the execution.

getId() - Method in class com.dnanexus.DXObject

Returns the ID of the object.

getId() - Method in class com.dnanexus.DXWorkflow.Stage

getInput(Class<T>) - Method in class com.dnanexus.DXExecution.Describe

Returns the execution's input as it will be given to the job (to the extent possible), deserialized to the specified class.

getInputReference(String) - Method in class com.dnanexus.DXWorkflow.Stage

Create a link to an input field.

getInputSpecification() - Method in class com.dnanexus.DXApplet.Describe

Returns the applet's input specification.

getInstance(String) - Static method in class com.dnanexus.DXAnalysis

Returns a DXAnalysis representing the specified analysis.

getInstance(String) - Static method in class com.dnanexus.DXApplet

Returns a DXApplet associated with an existing applet.

getInstance(String) - Static method in class com.dnanexus.DXContainer

Returns a DXProject or DXContainer associated with an existing project or container.

getInstance(String) - Static method in class com.dnanexus.DXDataObject

Returns a DXDataObject corresponding to an existing object with the specified ID.

getInstance(String) - Static method in class com.dnanexus.DXExecution

Returns a DXExecution corresponding to an existing execution with the specified ID.

getInstance(String) - Static method in class com.dnanexus.DXFile

Returns a DXFile associated with an existing file.

getInstance(String) - Static method in class com.dnanexus.DXJob

Returns a DXJob representing the specified job.

getInstance(String) - Static method in class com.dnanexus.DXProject

Returns a DXProject associated with an existing project.

getInstance(String) - Static method in class com.dnanexus.DXRecord

Returns a DXRecord associated with an existing record.

getInstance(String) - Static method in class com.dnanexus.DXWorkflow

Returns a DXWorkflow associated with an existing workflow.

getInstance(String, DXContainer) - Static method in class com.dnanexus.DXApplet

Returns a DXApplet associated with an existing applet in a particular project or container.

getInstance(String, DXContainer) - Static method in class com.dnanexus.DXDataObject

Returns a DXDataObject corresponding to an existing object with the specified ID in the specified project or container.

getInstance(String, DXContainer) - Static method in class com.dnanexus.DXFile

Returns a DXFile associated with an existing file in a particular project or container.

getInstance(String, DXContainer) - Static method in class com.dnanexus.DXRecord

Returns a DXRecord associated with an existing record in a particular project or container.

getInstance(String, DXContainer) - Static method in class com.dnanexus.DXWorkflow

Returns a DXWorkflow associated with an existing workflow in a particular project or container.

getInstance(String, String, int) - Static method in exception com.dnanexus.exceptions.DXAPIException

Constructs a DXAPIException of the appropriate subclass based on the errorType.

getInstanceWithEnvironment(String, DXContainer, DXEnvironment) - Static method in class com.dnanexus.DXApplet

Returns a DXApplet associated with an existing applet in a particular project using the specified environment.

getInstanceWithEnvironment(String, DXContainer, DXEnvironment) - Static method in class com.dnanexus.DXDataObject

Returns a DXDataObject corresponding to an existing object with the specified ID in the specified project or container, using the specified environment.

getInstanceWithEnvironment(String, DXContainer, DXEnvironment) - Static method in class com.dnanexus.DXFile

Returns a DXFile associated with an existing file in a particular project using the specified environment.

getInstanceWithEnvironment(String, DXContainer, DXEnvironment) - Static method in class com.dnanexus.DXRecord

Returns a DXRecord associated with an existing record in a particular project using the specified environment.

getInstanceWithEnvironment(String, DXContainer, DXEnvironment) - Static method in class com.dnanexus.DXWorkflow

Returns a DXWorkflow associated with an existing workflow in a particular project using the specified environment.

getInstanceWithEnvironment(String, DXEnvironment) - Static method in class com.dnanexus.DXAnalysis

Returns a DXAnalysis representing the specified analysis using the specified environment.

getInstanceWithEnvironment(String, DXEnvironment) - Static method in class com.dnanexus.DXApplet

Returns a DXApplet associated with an existing applet using the specified environment.

getInstanceWithEnvironment(String, DXEnvironment) - Static method in class com.dnanexus.DXContainer

Returns a DXProject or DXContainer associated with an existing project or container, using the specified environment.

getInstanceWithEnvironment(String, DXEnvironment) - Static method in class com.dnanexus.DXDataObject

Returns a DXDataObject corresponding to an existing object with the specified ID, using the specified environment.

getInstanceWithEnvironment(String, DXEnvironment) - Static method in class com.dnanexus.DXExecution

Returns a DXExecution corresponding to an existing execution with the specified ID, using the specified environment.

getInstanceWithEnvironment(String, DXEnvironment) - Static method in class com.dnanexus.DXFile

Returns a DXFile associated with an existing file using the specified environment.

getInstanceWithEnvironment(String, DXEnvironment) - Static method in class com.dnanexus.DXJob

Returns a DXJob representing the specified job using the specified environment.

getInstanceWithEnvironment(String, DXEnvironment) - Static method in class com.dnanexus.DXProject

Returns a DXProject associated with an existing project using the specified environment.

getInstanceWithEnvironment(String, DXEnvironment) - Static method in class com.dnanexus.DXRecord

Returns a DXRecord associated with an existing record using the specified environment.

getInstanceWithEnvironment(String, DXEnvironment) - Static method in class com.dnanexus.DXWorkflow

Returns a DXWorkflow associated with an existing workflow using the specified environment.

getInterpreter() - Method in class com.dnanexus.RunSpecification

Returns the interpreter for the applet.

getIOClass() - Method in class com.dnanexus.InputParameter

Returns the class of the parameter.

getIOClass() - Method in class com.dnanexus.OutputParameter

Returns the class of the parameter.

getJob() - Method in class com.dnanexus.DXEnvironment

Returns a handler to the currently running job.

getJobInput(Class<T>) - Static method in class com.dnanexus.DXUtil

Obtains the job input and deserializes it to the specified class.

getLaunchedBy() - Method in class com.dnanexus.DXExecution.Describe

Returns the user that launched this execution.

getLinkAsJson() - Method in class com.dnanexus.DXDataObject

Returns a DNAnexus link for this object.

getMD5(int) - Method in class com.dnanexus.DXFile.Describe

Returns the hexadecimal encoded value of MD5 message-digest of the specified file part.

getMediaType() - Method in class com.dnanexus.DXFile.Describe

Returns the Internet Media Type of the file.

getModificationDate() - Method in class com.dnanexus.DXDataObject.Describe

Returns the last modification date of the object.

getModifiedDate() - Method in class com.dnanexus.DXExecution.Describe

Returns the date at which the execution was last modified.

getName() - Method in class com.dnanexus.DXDataObject.Describe

Returns the name of the object.

getName() - Method in class com.dnanexus.DXExecution.Describe

Returns the name of the execution.

getName() - Method in class com.dnanexus.DXProject.Describe

Returns the name of the project.

getName() - Method in class com.dnanexus.InputParameter

Returns the name of the parameter.

getName() - Method in class com.dnanexus.OutputParameter

Returns the name of the parameter.

getNewObjectId(JsonNode) - Static method in class com.dnanexus.DXDataObject.Builder

Deserializes the response to a /class-xxxx/new API call and returns the ID of the newly created object.

getNewState() - Method in class com.dnanexus.DXJob.StateTransition

Returns the state of the job after the transition.

getNext() - Method in interface com.dnanexus.DXSearch.FindResultPage

Returns an object that can be used in a later call to getSubsequentPage (e.g.

getObjectBuilder() - Static method in class com.dnanexus.DXJSON

Creates a new ObjectBuilder, initialized to produce an empty object.

getObjects() - Method in class com.dnanexus.DXContainer.FolderContents

Lists all data objects in the specified folder.

getOriginalInput(Class<T>) - Method in class com.dnanexus.DXExecution.Describe

Returns the input of the execution, with default values filled in for optional inputs that were not provided, deserialized to the specified class.

getOriginJob() - Method in class com.dnanexus.DXJob.Describe

Returns the closest ancestor job whose parentJob is null.

getOutput(Class<T>) - Method in class com.dnanexus.DXAnalysis.Describe

Returns the output of the analysis, deserialized to the specified class, or null if no output hash is available.

getOutput(Class<T>) - Method in class com.dnanexus.DXAnalysis

getOutput(Class<T>) - Method in class com.dnanexus.DXExecution.Describe

Returns the output of the execution, deserialized to the specified class, or null if no output hash is available.

getOutput(Class<T>) - Method in class com.dnanexus.DXExecution

Returns the output of the execution, deserialized to the specified class.

getOutput(Class<T>) - Method in class com.dnanexus.DXJob.Describe

Returns the output of the job, deserialized to the specified class, or null if no output hash is available.

getOutput(Class<T>) - Method in class com.dnanexus.DXJob

getOutputReference(String) - Method in class com.dnanexus.DXWorkflow.Stage

Create a link to an output field.

getOutputSpecification() - Method in class com.dnanexus.DXApplet.Describe

Returns the applet's output specification.

getParentAnalysis() - Method in class com.dnanexus.DXExecution.Describe

Returns the execution's parent analysis, or null if the execution was not created by a analysis.

getParentJob() - Method in class com.dnanexus.DXExecution.Describe

Returns the execution's parent job, or null if the execution was not created by a job.

getProject() - Method in class com.dnanexus.DXDataObject.Describe

Returns the project or container from which user-provided metadata was retrieved.

getProject() - Method in class com.dnanexus.DXDataObject

Returns the object's project or container, if it was explicitly supplied.

getProject() - Method in class com.dnanexus.DXExecution.Describe

Returns the project in which this execution was run.

getProjectCache() - Method in class com.dnanexus.DXJob.Describe

Returns the project cache container for the job if it is running an app, or null otherwise.

getProjectContext() - Method in class com.dnanexus.DXEnvironment

Returns the current project context.

getProperties() - Method in class com.dnanexus.DXDataObject.Describe

Returns the properties associated with the object.

getProperties() - Method in class com.dnanexus.DXExecution.Describe

Returns the properties associated with the execution.

getProxy() - Method in class com.dnanexus.DXEnvironment

Returns the proxy

getRelease() - Method in class com.dnanexus.RunSpecification

Returns the release for the applet.

getResources() - Method in class com.dnanexus.DXJob.Describe

Returns the resources container for the job if it is running an app, or null otherwise.

getRootExecution() - Method in class com.dnanexus.DXExecution.Describe

Returns the execution at the root of the execution tree (the job or analysis that was created by a user's external API call rather than by a job or run as a stage in an analysis).

getRunInput(Class<T>) - Method in class com.dnanexus.DXExecution.Describe

Returns the raw input of the execution, deserialized to the specified class.

getRunSpecification() - Method in class com.dnanexus.DXApplet.Describe

Returns the applet's run specification.

getSecondsToWaitForRetry() - Method in exception com.dnanexus.exceptions.ServiceUnavailableException

getSecurityContext() - Method in class com.dnanexus.DXEnvironment

Deprecated.

getSetAt() - Method in class com.dnanexus.DXJob.StateTransition

Returns the date at which the new state became effective.

getSize() - Method in class com.dnanexus.DXFile.Describe

Returns the size of the file in bytes.

getSize() - Method in class com.dnanexus.DXProject.UnarchiveResults

Returns the size of the data (in GB) that will be unarchived.

getSocketTimeout() - Method in class com.dnanexus.DXEnvironment

Returns socket read timeout for http client

getStage() - Method in class com.dnanexus.DXExecution.Describe

Returns the stage that this execution is associated with, if it was run as a stage in an analysis; null otherwise.

getStartDate() - Method in class com.dnanexus.DXJob.Describe

Returns the date that the job started running, or null if the job has not started running yet.

getState() - Method in class com.dnanexus.DXAnalysis.Describe

Returns the state of the analysis.

getState() - Method in class com.dnanexus.DXDataObject.Describe

Returns the state of the object.

getState() - Method in class com.dnanexus.DXJob.Describe

Returns the state of the job.

getStateTransitions() - Method in class com.dnanexus.DXJob.Describe

Returns a list of the state transitions for the job, showing each state that the job reached and at what time.

getStatusCode() - Method in exception com.dnanexus.exceptions.DXAPIException

Returns the HTTP status code associated with the error.

getStopDate() - Method in class com.dnanexus.DXJob.Describe

Returns the date that the job stopped running, or null if the job has not stopped running yet.

getSubfolders() - Method in class com.dnanexus.DXContainer.FolderContents

Lists all subfolders of the specified folder.

getSubsequentPage(JsonNode, int) - Method in class com.dnanexus.DXSearch.FindDataObjectsResult

Returns a subsequent page of the findDataObjects results starting from the specified item.

getSummary() - Method in class com.dnanexus.DXApplet.Describe

Returns the applet summary.

getTags() - Method in class com.dnanexus.DXDataObject.Describe

Returns a list of tags associated with the object.

getTags() - Method in class com.dnanexus.DXExecution.Describe

Returns the tags associated with the execution.

getThisInstance() - Method in class com.dnanexus.DXApplet.Builder

getThisInstance() - Method in class com.dnanexus.DXDataObject.Builder

Returns the builder object.

getThisInstance() - Method in class com.dnanexus.DXFile.Builder

getThisInstance() - Method in class com.dnanexus.DXRecord.Builder

getThisInstance() - Method in class com.dnanexus.DXWorkflow.Builder

getTitle() - Method in class com.dnanexus.DXApplet.Describe

Returns the applet title.

getTotalPrice() - Method in class com.dnanexus.DXExecution.Describe

Returns the total price of the job.

getTry() - Method in class com.dnanexus.DXJob.Describe

Returns the try for this job, with 0 corresponding to the first try, 1 corresponding to the second try for restarted jobs and so on.

getTypes() - Method in class com.dnanexus.DXDataObject.Describe

Returns a list of types associated with the object.

getUploadStream() - Method in class com.dnanexus.DXFile

Returns an OutputStream that uploads any data written to it

getValue() - Method in class com.dnanexus.DXWorkflow.Modification

getWorkspace() - Method in class com.dnanexus.DXEnvironment

Returns the temporary workspace of the currently running job, or the current project if this method is called outside the Execution Environment.

getWorkspace() - Method in class com.dnanexus.DXExecution.Describe

Returns the temporary workspace associated with the execution.

globalWorkflowAddAuthorizedUsers(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowAddAuthorizedUsers(String, Class) instead and supply your own class to deserialize to.

globalWorkflowAddAuthorizedUsers(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowAddAuthorizedUsers(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowAddAuthorizedUsers(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowAddAuthorizedUsers(String, Object, Class) instead and supply your own class to deserialize to.

globalWorkflowAddAuthorizedUsers(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowAddAuthorizedUsers(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowAddAuthorizedUsers(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowAddAuthorizedUsers method with an empty input, deserializing to an object of the specified class.

globalWorkflowAddAuthorizedUsers(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowAddAuthorizedUsers method with an empty input using the given environment, deserializing to an object of the specified class.

globalWorkflowAddAuthorizedUsers(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowAddAuthorizedUsers method with the given input, deserializing to an object of the specified class.

globalWorkflowAddAuthorizedUsers(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowAddAuthorizedUsers method with the given input using the given environment, deserializing to an object of the specified class.

globalWorkflowAddCategories(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowAddCategories(String, Class) instead and supply your own class to deserialize to.

globalWorkflowAddCategories(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowAddCategories(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowAddCategories(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowAddCategories(String, Object, Class) instead and supply your own class to deserialize to.

globalWorkflowAddCategories(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowAddCategories(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowAddCategories(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowAddCategories method with an empty input, deserializing to an object of the specified class.

globalWorkflowAddCategories(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowAddCategories method with an empty input using the given environment, deserializing to an object of the specified class.

globalWorkflowAddCategories(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowAddCategories method with the given input, deserializing to an object of the specified class.

globalWorkflowAddCategories(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowAddCategories method with the given input using the given environment, deserializing to an object of the specified class.

globalWorkflowAddDevelopers(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowAddDevelopers(String, Class) instead and supply your own class to deserialize to.

globalWorkflowAddDevelopers(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowAddDevelopers(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowAddDevelopers(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowAddDevelopers(String, Object, Class) instead and supply your own class to deserialize to.

globalWorkflowAddDevelopers(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowAddDevelopers(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowAddDevelopers(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowAddDevelopers method with an empty input, deserializing to an object of the specified class.

globalWorkflowAddDevelopers(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowAddDevelopers method with an empty input using the given environment, deserializing to an object of the specified class.

globalWorkflowAddDevelopers(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowAddDevelopers method with the given input, deserializing to an object of the specified class.

globalWorkflowAddDevelopers(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowAddDevelopers method with the given input using the given environment, deserializing to an object of the specified class.

globalWorkflowAddTags(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowAddTags(String, Class) instead and supply your own class to deserialize to.

globalWorkflowAddTags(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowAddTags(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowAddTags(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowAddTags(String, Object, Class) instead and supply your own class to deserialize to.

globalWorkflowAddTags(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowAddTags(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowAddTags(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowAddTags method with an empty input, deserializing to an object of the specified class.

globalWorkflowAddTags(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowAddTags method with an empty input using the given environment, deserializing to an object of the specified class.

globalWorkflowAddTags(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowAddTags method with the given input, deserializing to an object of the specified class.

globalWorkflowAddTags(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowAddTags method with the given input using the given environment, deserializing to an object of the specified class.

globalWorkflowDelete(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowDelete(String, Class) instead and supply your own class to deserialize to.

globalWorkflowDelete(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowDelete(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowDelete(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowDelete(String, Object, Class) instead and supply your own class to deserialize to.

globalWorkflowDelete(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowDelete(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowDelete(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowDelete method with an empty input, deserializing to an object of the specified class.

globalWorkflowDelete(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowDelete method with an empty input using the given environment, deserializing to an object of the specified class.

globalWorkflowDelete(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowDelete method with the given input, deserializing to an object of the specified class.

globalWorkflowDelete(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowDelete method with the given input using the given environment, deserializing to an object of the specified class.

globalWorkflowDescribe(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowDescribe(String, Class) instead and supply your own class to deserialize to.

globalWorkflowDescribe(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowDescribe(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowDescribe(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowDescribe(String, Object, Class) instead and supply your own class to deserialize to.

globalWorkflowDescribe(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowDescribe(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowDescribe(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowDescribe method with an empty input, deserializing to an object of the specified class.

globalWorkflowDescribe(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowDescribe method with an empty input using the given environment, deserializing to an object of the specified class.

globalWorkflowDescribe(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowDescribe method with the given input, deserializing to an object of the specified class.

globalWorkflowDescribe(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowDescribe method with the given input using the given environment, deserializing to an object of the specified class.

globalWorkflowListAuthorizedUsers(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowListAuthorizedUsers(String, Class) instead and supply your own class to deserialize to.

globalWorkflowListAuthorizedUsers(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowListAuthorizedUsers(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowListAuthorizedUsers(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowListAuthorizedUsers(String, Object, Class) instead and supply your own class to deserialize to.

globalWorkflowListAuthorizedUsers(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowListAuthorizedUsers(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowListAuthorizedUsers(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowListAuthorizedUsers method with an empty input, deserializing to an object of the specified class.

globalWorkflowListAuthorizedUsers(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowListAuthorizedUsers method with an empty input using the given environment, deserializing to an object of the specified class.

globalWorkflowListAuthorizedUsers(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowListAuthorizedUsers method with the given input, deserializing to an object of the specified class.

globalWorkflowListAuthorizedUsers(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowListAuthorizedUsers method with the given input using the given environment, deserializing to an object of the specified class.

globalWorkflowListCategories(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowListCategories(String, Class) instead and supply your own class to deserialize to.

globalWorkflowListCategories(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowListCategories(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowListCategories(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowListCategories(String, Object, Class) instead and supply your own class to deserialize to.

globalWorkflowListCategories(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowListCategories(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowListCategories(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowListCategories method with an empty input, deserializing to an object of the specified class.

globalWorkflowListCategories(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowListCategories method with an empty input using the given environment, deserializing to an object of the specified class.

globalWorkflowListCategories(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowListCategories method with the given input, deserializing to an object of the specified class.

globalWorkflowListCategories(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowListCategories method with the given input using the given environment, deserializing to an object of the specified class.

globalWorkflowListDevelopers(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowListDevelopers(String, Class) instead and supply your own class to deserialize to.

globalWorkflowListDevelopers(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowListDevelopers(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowListDevelopers(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowListDevelopers(String, Object, Class) instead and supply your own class to deserialize to.

globalWorkflowListDevelopers(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowListDevelopers(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowListDevelopers(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowListDevelopers method with an empty input, deserializing to an object of the specified class.

globalWorkflowListDevelopers(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowListDevelopers method with an empty input using the given environment, deserializing to an object of the specified class.

globalWorkflowListDevelopers(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowListDevelopers method with the given input, deserializing to an object of the specified class.

globalWorkflowListDevelopers(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowListDevelopers method with the given input using the given environment, deserializing to an object of the specified class.

globalWorkflowNew() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowNew(Class) instead and supply your own class to deserialize to.

globalWorkflowNew(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowNew(Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowNew(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowNew(Object, Class) instead and supply your own class to deserialize to.

globalWorkflowNew(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowNew(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowNew(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowNew method with an empty input, deserializing to an object of the specified class.

globalWorkflowNew(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowNew method with an empty input using the specified environment, deserializing to an object of the specified class.

globalWorkflowNew(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowNew method with the specified input, deserializing to an object of the specified class.

globalWorkflowNew(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowNew method with the specified input using the specified environment, deserializing to an object of the specified class.

globalWorkflowPublish(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowPublish(String, Class) instead and supply your own class to deserialize to.

globalWorkflowPublish(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowPublish(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowPublish(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowPublish(String, Object, Class) instead and supply your own class to deserialize to.

globalWorkflowPublish(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowPublish(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowPublish(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowPublish method with an empty input, deserializing to an object of the specified class.

globalWorkflowPublish(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowPublish method with an empty input using the given environment, deserializing to an object of the specified class.

globalWorkflowPublish(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowPublish method with the given input, deserializing to an object of the specified class.

globalWorkflowPublish(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowPublish method with the given input using the given environment, deserializing to an object of the specified class.

globalWorkflowRemoveAuthorizedUsers(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowRemoveAuthorizedUsers(String, Class) instead and supply your own class to deserialize to.

globalWorkflowRemoveAuthorizedUsers(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowRemoveAuthorizedUsers(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowRemoveAuthorizedUsers(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowRemoveAuthorizedUsers(String, Object, Class) instead and supply your own class to deserialize to.

globalWorkflowRemoveAuthorizedUsers(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowRemoveAuthorizedUsers(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowRemoveAuthorizedUsers(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowRemoveAuthorizedUsers method with an empty input, deserializing to an object of the specified class.

globalWorkflowRemoveAuthorizedUsers(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowRemoveAuthorizedUsers method with an empty input using the given environment, deserializing to an object of the specified class.

globalWorkflowRemoveAuthorizedUsers(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowRemoveAuthorizedUsers method with the given input, deserializing to an object of the specified class.

globalWorkflowRemoveAuthorizedUsers(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowRemoveAuthorizedUsers method with the given input using the given environment, deserializing to an object of the specified class.

globalWorkflowRemoveCategories(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowRemoveCategories(String, Class) instead and supply your own class to deserialize to.

globalWorkflowRemoveCategories(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowRemoveCategories(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowRemoveCategories(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowRemoveCategories(String, Object, Class) instead and supply your own class to deserialize to.

globalWorkflowRemoveCategories(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowRemoveCategories(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowRemoveCategories(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowRemoveCategories method with an empty input, deserializing to an object of the specified class.

globalWorkflowRemoveCategories(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowRemoveCategories method with an empty input using the given environment, deserializing to an object of the specified class.

globalWorkflowRemoveCategories(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowRemoveCategories method with the given input, deserializing to an object of the specified class.

globalWorkflowRemoveCategories(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowRemoveCategories method with the given input using the given environment, deserializing to an object of the specified class.

globalWorkflowRemoveDevelopers(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowRemoveDevelopers(String, Class) instead and supply your own class to deserialize to.

globalWorkflowRemoveDevelopers(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowRemoveDevelopers(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowRemoveDevelopers(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowRemoveDevelopers(String, Object, Class) instead and supply your own class to deserialize to.

globalWorkflowRemoveDevelopers(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowRemoveDevelopers(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowRemoveDevelopers(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowRemoveDevelopers method with an empty input, deserializing to an object of the specified class.

globalWorkflowRemoveDevelopers(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowRemoveDevelopers method with an empty input using the given environment, deserializing to an object of the specified class.

globalWorkflowRemoveDevelopers(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowRemoveDevelopers method with the given input, deserializing to an object of the specified class.

globalWorkflowRemoveDevelopers(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowRemoveDevelopers method with the given input using the given environment, deserializing to an object of the specified class.

globalWorkflowRemoveTags(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowRemoveTags(String, Class) instead and supply your own class to deserialize to.

globalWorkflowRemoveTags(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowRemoveTags(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowRemoveTags(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowRemoveTags(String, Object, Class) instead and supply your own class to deserialize to.

globalWorkflowRemoveTags(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowRemoveTags(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowRemoveTags(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowRemoveTags method with an empty input, deserializing to an object of the specified class.

globalWorkflowRemoveTags(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowRemoveTags method with an empty input using the given environment, deserializing to an object of the specified class.

globalWorkflowRemoveTags(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowRemoveTags method with the given input, deserializing to an object of the specified class.

globalWorkflowRemoveTags(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowRemoveTags method with the given input using the given environment, deserializing to an object of the specified class.

globalWorkflowRun(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowRun(String, Class) instead and supply your own class to deserialize to.

globalWorkflowRun(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowRun(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowRun(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowRun(String, Object, Class) instead and supply your own class to deserialize to.

globalWorkflowRun(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowRun(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowRun(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowRun method with an empty input, deserializing to an object of the specified class.

globalWorkflowRun(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowRun method with an empty input using the given environment, deserializing to an object of the specified class.

globalWorkflowRun(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowRun method with the given input, deserializing to an object of the specified class.

globalWorkflowRun(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowRun method with the given input using the given environment, deserializing to an object of the specified class.

globalWorkflowUpdate(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowUpdate(String, Class) instead and supply your own class to deserialize to.

globalWorkflowUpdate(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowUpdate(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowUpdate(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowUpdate(String, Object, Class) instead and supply your own class to deserialize to.

globalWorkflowUpdate(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.globalWorkflowUpdate(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

globalWorkflowUpdate(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowUpdate method with an empty input, deserializing to an object of the specified class.

globalWorkflowUpdate(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowUpdate method with an empty input using the given environment, deserializing to an object of the specified class.

globalWorkflowUpdate(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowUpdate method with the given input, deserializing to an object of the specified class.

globalWorkflowUpdate(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the globalWorkflowUpdate method with the given input using the given environment, deserializing to an object of the specified class.

H

HASH - com.dnanexus.IOClass

hashCode() - Method in class com.dnanexus.DXDataObject

hashCode() - Method in class com.dnanexus.DXJob.StateTransition

hashCode() - Method in class com.dnanexus.DXObject

hasNextPage() - Method in interface com.dnanexus.DXSearch.FindResultPage

Returns true if more results exist.

hidden - Variable in class com.dnanexus.DXDataObject.Builder

HIDDEN - com.dnanexus.DXSearch.VisibilityQuery

Search for only hidden items.

httpclient - Variable in class com.dnanexus.DXHTTPRequest

I

id - Variable in class com.dnanexus.DXExecution.DescribeResponseHash

IDLE - com.dnanexus.JobState

IN_PROGRESS - com.dnanexus.AnalysisState

includeDescribeOutput() - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Requests the default describe data for each matching data object when the query is run.

includeDescribeOutput() - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Requests the default describe data for each matching execution when the query is run.

includeDescribeOutput(DXDataObject.DescribeOptions) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Requests describe data (with the specified options) for each matching data object when the query is run.

includeSubjobs(boolean) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Specifies whether subjobs should be included among the results (default is true).

inFolder(DXContainer, String) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns objects in the specified folder of the specified project (not in subfolders).

inFolder(String) - Method in class com.dnanexus.ExecutableRunner

Deprecated.

Use ExecutableRunner.setFolder(String) instead

inFolderOrSubfolders(DXContainer, String) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns objects in the specified folder of the specified project or in its subfolders.

inProject(DXContainer) - Method in class com.dnanexus.DXDataObject.DescribeOptions

Returns a DescribeOptions that behaves like the current one, except that project-specific metadata will be retrieved from the specified project or container.

inProject(DXContainer) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns objects in the specified project.

inProject(DXContainer) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only returns executions in the specified project.

inProject(DXProject) - Method in class com.dnanexus.ExecutableRunner

Deprecated.

Use ExecutableRunner.setProject(DXProject) instead

input - Variable in class com.dnanexus.DXExecution.DescribeResponseHash

InputParameter - Class in com.dnanexus

An input parameter for an executable.

InputParameter.Builder - Class in com.dnanexus

Builder class for creating new input parameters.

INT - com.dnanexus.IOClass

InternalErrorException - Exception in com.dnanexus.exceptions

Exception which indicates a 500 status code Internal Server Error.

InternalErrorException(String, int) - Constructor for exception com.dnanexus.exceptions.InternalErrorException

Creates an InternalErrorException with the specified message and HTTP status code.

InvalidAuthenticationException - Exception in com.dnanexus.exceptions

The OAuth2 token supplied with the request was invalid.

InvalidAuthenticationException(String, int) - Constructor for exception com.dnanexus.exceptions.InvalidAuthenticationException

Creates an InvalidAuthenticationException with the specified message and HTTP status code.

InvalidInputException - Exception in com.dnanexus.exceptions

The input is syntactically correct but semantically incorrect.

InvalidInputException(String, int) - Constructor for exception com.dnanexus.exceptions.InvalidInputException

Creates an InvalidInputException with the specified message and HTTP status code.

InvalidStateException - Exception in com.dnanexus.exceptions

The operation is not allowed at this object state.

InvalidStateException(String, int) - Constructor for exception com.dnanexus.exceptions.InvalidStateException

Creates an InvalidStateException with the specified message and HTTP status code.

InvalidTypeException - Exception in com.dnanexus.exceptions

An object specified in the request is of invalid type.

InvalidTypeException(String, int) - Constructor for exception com.dnanexus.exceptions.InvalidTypeException

Creates an InvalidTypeException with the specified message and HTTP status code.

IOClass - Enum in com.dnanexus

The type of an input or output field of an executable.

isFree() - Method in class com.dnanexus.DXJob.Describe

Returns whether the job will be charged to the billed entity (billTo).

isOptional() - Method in class com.dnanexus.InputParameter

Returns whether the parameter is optional.

isOptional() - Method in class com.dnanexus.OutputParameter

Returns whether the parameter is optional.

isRetryDisabled() - Method in class com.dnanexus.DXEnvironment

Returns whether the retry of HTTP requests should be disabled.

isVisible() - Method in class com.dnanexus.DXDataObject.Describe

Returns whether the object is visible.

isWorkspaceDestructionDelayed() - Method in class com.dnanexus.DXExecution.Describe

Returns true if the execution's temporary workspace will be kept around for 3 days after the execution finishes.

iterator() - Method in class com.dnanexus.DXSearch.FindDataObjectsResult

iterator() - Method in class com.dnanexus.DXSearch.FindExecutionsResult

J

jobAddTags(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobAddTags(String, Class) instead and supply your own class to deserialize to.

jobAddTags(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobAddTags(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

jobAddTags(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobAddTags(String, Object, Class) instead and supply your own class to deserialize to.

jobAddTags(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobAddTags(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

jobAddTags(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the jobAddTags method with an empty input, deserializing to an object of the specified class.

jobAddTags(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the jobAddTags method with an empty input using the given environment, deserializing to an object of the specified class.

jobAddTags(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the jobAddTags method with the given input, deserializing to an object of the specified class.

jobAddTags(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the jobAddTags method with the given input using the given environment, deserializing to an object of the specified class.

jobDescribe(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobDescribe(String, Class) instead and supply your own class to deserialize to.

jobDescribe(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobDescribe(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

jobDescribe(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobDescribe(String, Object, Class) instead and supply your own class to deserialize to.

jobDescribe(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobDescribe(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

jobDescribe(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the jobDescribe method with an empty input, deserializing to an object of the specified class.

jobDescribe(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the jobDescribe method with an empty input using the given environment, deserializing to an object of the specified class.

jobDescribe(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the jobDescribe method with the given input, deserializing to an object of the specified class.

jobDescribe(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the jobDescribe method with the given input using the given environment, deserializing to an object of the specified class.

jobGetIdentityToken(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobGetIdentityToken(String, Class) instead and supply your own class to deserialize to.

jobGetIdentityToken(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobGetIdentityToken(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

jobGetIdentityToken(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobGetIdentityToken(String, Object, Class) instead and supply your own class to deserialize to.

jobGetIdentityToken(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobGetIdentityToken(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

jobGetIdentityToken(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the jobGetIdentityToken method with an empty input, deserializing to an object of the specified class.

jobGetIdentityToken(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the jobGetIdentityToken method with an empty input using the given environment, deserializing to an object of the specified class.

jobGetIdentityToken(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the jobGetIdentityToken method with the given input, deserializing to an object of the specified class.

jobGetIdentityToken(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the jobGetIdentityToken method with the given input using the given environment, deserializing to an object of the specified class.

jobGetLog(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobGetLog(String, Class) instead and supply your own class to deserialize to.

jobGetLog(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobGetLog(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

jobGetLog(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobGetLog(String, Object, Class) instead and supply your own class to deserialize to.

jobGetLog(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobGetLog(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

jobGetLog(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the jobGetLog method with an empty input, deserializing to an object of the specified class.

jobGetLog(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the jobGetLog method with an empty input using the given environment, deserializing to an object of the specified class.

jobGetLog(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the jobGetLog method with the given input, deserializing to an object of the specified class.

jobGetLog(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the jobGetLog method with the given input using the given environment, deserializing to an object of the specified class.

jobNew() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobNew(Class) instead and supply your own class to deserialize to.

jobNew(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobNew(Class, DXEnvironment) instead and supply your own class to deserialize to.

jobNew(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobNew(Object, Class) instead and supply your own class to deserialize to.

jobNew(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobNew(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

jobNew(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the jobNew method with an empty input, deserializing to an object of the specified class.

jobNew(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the jobNew method with an empty input using the specified environment, deserializing to an object of the specified class.

jobNew(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the jobNew method with the specified input, deserializing to an object of the specified class.

jobNew(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the jobNew method with the specified input using the specified environment, deserializing to an object of the specified class.

jobRemoveTags(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobRemoveTags(String, Class) instead and supply your own class to deserialize to.

jobRemoveTags(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobRemoveTags(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

jobRemoveTags(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobRemoveTags(String, Object, Class) instead and supply your own class to deserialize to.

jobRemoveTags(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobRemoveTags(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

jobRemoveTags(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the jobRemoveTags method with an empty input, deserializing to an object of the specified class.

jobRemoveTags(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the jobRemoveTags method with an empty input using the given environment, deserializing to an object of the specified class.

jobRemoveTags(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the jobRemoveTags method with the given input, deserializing to an object of the specified class.

jobRemoveTags(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the jobRemoveTags method with the given input using the given environment, deserializing to an object of the specified class.

jobSetProperties(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobSetProperties(String, Class) instead and supply your own class to deserialize to.

jobSetProperties(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobSetProperties(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

jobSetProperties(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobSetProperties(String, Object, Class) instead and supply your own class to deserialize to.

jobSetProperties(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobSetProperties(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

jobSetProperties(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the jobSetProperties method with an empty input, deserializing to an object of the specified class.

jobSetProperties(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the jobSetProperties method with an empty input using the given environment, deserializing to an object of the specified class.

jobSetProperties(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the jobSetProperties method with the given input, deserializing to an object of the specified class.

jobSetProperties(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the jobSetProperties method with the given input using the given environment, deserializing to an object of the specified class.

JobState - Enum in com.dnanexus

The state of a job in the system.

jobTerminate(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobTerminate(String, Class) instead and supply your own class to deserialize to.

jobTerminate(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobTerminate(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

jobTerminate(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobTerminate(String, Object, Class) instead and supply your own class to deserialize to.

jobTerminate(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobTerminate(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

jobTerminate(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the jobTerminate method with an empty input, deserializing to an object of the specified class.

jobTerminate(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the jobTerminate method with an empty input using the given environment, deserializing to an object of the specified class.

jobTerminate(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the jobTerminate method with the given input, deserializing to an object of the specified class.

jobTerminate(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the jobTerminate method with the given input using the given environment, deserializing to an object of the specified class.

jobUpdate(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobUpdate(String, Class) instead and supply your own class to deserialize to.

jobUpdate(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobUpdate(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

jobUpdate(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobUpdate(String, Object, Class) instead and supply your own class to deserialize to.

jobUpdate(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.jobUpdate(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

jobUpdate(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the jobUpdate method with an empty input, deserializing to an object of the specified class.

jobUpdate(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the jobUpdate method with an empty input using the given environment, deserializing to an object of the specified class.

jobUpdate(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the jobUpdate method with the given input, deserializing to an object of the specified class.

jobUpdate(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the jobUpdate method with the given input using the given environment, deserializing to an object of the specified class.

L

launchedBy - Variable in class com.dnanexus.DXExecution.DescribeResponseHash

launchedBy(String) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only returns executions launched by the specified user.

listFolder(String) - Method in class com.dnanexus.DXContainer

Lists the data objects and subfolders inside the specified folder.

listProjects() - Method in class com.dnanexus.DXDataObject

Returns the set of projects that contain this object, and which the requesting user has permissions to access.

LIVE - com.dnanexus.ArchivalState

The file is in standard storage, such as AWS S3 or Azure Blob.

M

MAPPER - Static variable in class com.dnanexus.DXObject

MAPPER - Static variable in class com.dnanexus.ExecutableRunner

maxTotalConnections(int) - Method in class com.dnanexus.DXEnvironment.Builder

Sets maxTotalConnections for httpclient

modified - Variable in class com.dnanexus.DXExecution.DescribeResponseHash

modifiedAfter(Date) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns data objects that were last modified after the specified time.

modifiedBefore(Date) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns data objects that were last modified before the specified time.

move(List<? extends DXDataObject>, List<String>, String) - Method in class com.dnanexus.DXContainer

Moves the specified data objects and folders to a destination folder in the same container.

moveFolders(List<String>, String) - Method in class com.dnanexus.DXContainer

Moves the specified folders to a destination folder in the same container.

moveObjects(List<? extends DXDataObject>, String) - Method in class com.dnanexus.DXContainer

Moves the specified data objects to a destination folder in the same container.

N

name - Variable in class com.dnanexus.DXDataObject.Builder

name - Variable in class com.dnanexus.DXExecution.DescribeResponseHash

nameMatchesExactly(String) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns objects whose names exactly equal the specified string.

nameMatchesExactly(String) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only returns executions whose names exactly equal the specified string.

nameMatchesGlob(String) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns objects whose name match the specified glob.

nameMatchesGlob(String) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only returns executions whose names match the specified glob.

nameMatchesRegexp(String) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns objects whose names match the specified regexp.

nameMatchesRegexp(String) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only returns executions whose names match the specified regexp.

nameMatchesRegexp(String, boolean) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns objects whose names match the specified regexp (optionally allowing the match to be case insensitive).

nameMatchesRegexp(String, boolean) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only returns executions whose names match the specified regexp (optionally allowing the match to be case insensitive).

newApplet() - Static method in class com.dnanexus.DXApplet

Returns a Builder object for creating a new DXApplet.

newAppletWithEnvironment(DXEnvironment) - Static method in class com.dnanexus.DXApplet

Returns a Builder object for creating a new DXApplet using the specified environment.

newFile() - Static method in class com.dnanexus.DXFile

Returns a Builder object for creating a new DXFile.

newFileWithEnvironment(DXEnvironment) - Static method in class com.dnanexus.DXFile

Returns a Builder object for creating a new DXFile using the specified environment.

newFolder(String) - Method in class com.dnanexus.DXContainer

Creates the specified folder.

newFolder(String, boolean) - Method in class com.dnanexus.DXContainer

Creates the specified folder, optionally creating parent folders as well.

newInputParameter(String, IOClass) - Static method in class com.dnanexus.InputParameter

Returns a new input parameter builder initialized with the specified input name and class.

newOutputParameter(String, IOClass) - Static method in class com.dnanexus.OutputParameter

Returns a new output parameter builder initialized with the specified output name and class.

newProject() - Static method in class com.dnanexus.DXProject

Returns a Builder object for creating a new DXProject.

newProjectWithEnvironment(DXEnvironment) - Static method in class com.dnanexus.DXProject

Returns a Builder object for creating a new DXProject using the specified environment.

newRecord() - Static method in class com.dnanexus.DXRecord

Returns a Builder object for creating a new DXRecord.

newRecordWithEnvironment(DXEnvironment) - Static method in class com.dnanexus.DXRecord

Returns a Builder object for creating a new DXRecord using the specified environment.

newRun() - Method in class com.dnanexus.DXApplet

newRun() - Method in interface com.dnanexus.DXExecutable

Returns an object for creating a new run of this executable.

newRun() - Method in class com.dnanexus.DXWorkflow

newRunSpec(String, String, String, String) - Static method in class com.dnanexus.RunSpecification

Returns a builder initialized to create a run specification with the given interpreter, entry point code, distribution and release.

newWorkflow() - Static method in class com.dnanexus.DXWorkflow

Returns a Builder object for creating a new DXWorkflow.

newWorkflowWithEnvironment(DXEnvironment) - Static method in class com.dnanexus.DXWorkflow

Returns a Builder object for creating a new DXWorkflow using the specified environment.

NONE - com.dnanexus.AccessLevel

User has no permissions.

NonNullJsonNodeFilter - Class in com.dnanexus

NonNullJsonNodeFilter() - Constructor for class com.dnanexus.NonNullJsonNodeFilter

notificationsGet() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.notificationsGet(Class) instead and supply your own class to deserialize to.

notificationsGet(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.notificationsGet(Class, DXEnvironment) instead and supply your own class to deserialize to.

notificationsGet(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.notificationsGet(Object, Class) instead and supply your own class to deserialize to.

notificationsGet(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.notificationsGet(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

notificationsGet(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the notificationsGet method with an empty input, deserializing to an object of the specified class.

notificationsGet(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the notificationsGet method with an empty input using the specified environment, deserializing to an object of the specified class.

notificationsGet(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the notificationsGet method with the specified input, deserializing to an object of the specified class.

notificationsGet(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the notificationsGet method with the specified input using the specified environment, deserializing to an object of the specified class.

notificationsMarkRead() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.notificationsMarkRead(Class) instead and supply your own class to deserialize to.

notificationsMarkRead(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.notificationsMarkRead(Class, DXEnvironment) instead and supply your own class to deserialize to.

notificationsMarkRead(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.notificationsMarkRead(Object, Class) instead and supply your own class to deserialize to.

notificationsMarkRead(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.notificationsMarkRead(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

notificationsMarkRead(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the notificationsMarkRead method with an empty input, deserializing to an object of the specified class.

notificationsMarkRead(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the notificationsMarkRead method with an empty input using the specified environment, deserializing to an object of the specified class.

notificationsMarkRead(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the notificationsMarkRead method with the specified input, deserializing to an object of the specified class.

notificationsMarkRead(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the notificationsMarkRead method with the specified input using the specified environment, deserializing to an object of the specified class.

O

ObjectBuilder() - Constructor for class com.dnanexus.DXJSON.ObjectBuilder

Initializes an ObjectBuilder which will generate an empty object.

of(String) - Static method in class com.dnanexus.DXSearch.TagsQuery

A query that matches the specified tag.

of(String) - Static method in class com.dnanexus.DXSearch.TypeQuery

A query that matches the specified type.

OPEN - com.dnanexus.DataObjectState

optional() - Method in class com.dnanexus.InputParameter.Builder

Makes this input parameter optional.

optional() - Method in class com.dnanexus.OutputParameter.Builder

Makes this output parameter optional.

orgDescribe(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgDescribe(String, Class) instead and supply your own class to deserialize to.

orgDescribe(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgDescribe(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

orgDescribe(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgDescribe(String, Object, Class) instead and supply your own class to deserialize to.

orgDescribe(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgDescribe(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

orgDescribe(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the orgDescribe method with an empty input, deserializing to an object of the specified class.

orgDescribe(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the orgDescribe method with an empty input using the given environment, deserializing to an object of the specified class.

orgDescribe(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the orgDescribe method with the given input, deserializing to an object of the specified class.

orgDescribe(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the orgDescribe method with the given input using the given environment, deserializing to an object of the specified class.

OrgExpiredException - Exception in com.dnanexus.exceptions

The organization that would be billed for this action has expired.

OrgExpiredException(String, int) - Constructor for exception com.dnanexus.exceptions.OrgExpiredException

Creates a OrgExpiredException with the specified message and HTTP status code.

orgFindApps(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgFindApps(String, Class) instead and supply your own class to deserialize to.

orgFindApps(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgFindApps(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

orgFindApps(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgFindApps(String, Object, Class) instead and supply your own class to deserialize to.

orgFindApps(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgFindApps(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

orgFindApps(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the orgFindApps method with an empty input, deserializing to an object of the specified class.

orgFindApps(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the orgFindApps method with an empty input using the given environment, deserializing to an object of the specified class.

orgFindApps(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the orgFindApps method with the given input, deserializing to an object of the specified class.

orgFindApps(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the orgFindApps method with the given input using the given environment, deserializing to an object of the specified class.

orgFindMembers(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgFindMembers(String, Class) instead and supply your own class to deserialize to.

orgFindMembers(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgFindMembers(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

orgFindMembers(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgFindMembers(String, Object, Class) instead and supply your own class to deserialize to.

orgFindMembers(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgFindMembers(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

orgFindMembers(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the orgFindMembers method with an empty input, deserializing to an object of the specified class.

orgFindMembers(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the orgFindMembers method with an empty input using the given environment, deserializing to an object of the specified class.

orgFindMembers(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the orgFindMembers method with the given input, deserializing to an object of the specified class.

orgFindMembers(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the orgFindMembers method with the given input using the given environment, deserializing to an object of the specified class.

orgFindProjects(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgFindProjects(String, Class) instead and supply your own class to deserialize to.

orgFindProjects(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgFindProjects(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

orgFindProjects(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgFindProjects(String, Object, Class) instead and supply your own class to deserialize to.

orgFindProjects(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgFindProjects(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

orgFindProjects(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the orgFindProjects method with an empty input, deserializing to an object of the specified class.

orgFindProjects(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the orgFindProjects method with an empty input using the given environment, deserializing to an object of the specified class.

orgFindProjects(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the orgFindProjects method with the given input, deserializing to an object of the specified class.

orgFindProjects(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the orgFindProjects method with the given input using the given environment, deserializing to an object of the specified class.

orgInvite(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgInvite(String, Class) instead and supply your own class to deserialize to.

orgInvite(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgInvite(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

orgInvite(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgInvite(String, Object, Class) instead and supply your own class to deserialize to.

orgInvite(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgInvite(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

orgInvite(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the orgInvite method with an empty input, deserializing to an object of the specified class.

orgInvite(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the orgInvite method with an empty input using the given environment, deserializing to an object of the specified class.

orgInvite(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the orgInvite method with the given input, deserializing to an object of the specified class.

orgInvite(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the orgInvite method with the given input using the given environment, deserializing to an object of the specified class.

orgNew() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgNew(Class) instead and supply your own class to deserialize to.

orgNew(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgNew(Class, DXEnvironment) instead and supply your own class to deserialize to.

orgNew(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgNew(Object, Class) instead and supply your own class to deserialize to.

orgNew(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgNew(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

orgNew(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the orgNew method with an empty input, deserializing to an object of the specified class.

orgNew(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the orgNew method with an empty input using the specified environment, deserializing to an object of the specified class.

orgNew(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the orgNew method with the specified input, deserializing to an object of the specified class.

orgNew(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the orgNew method with the specified input using the specified environment, deserializing to an object of the specified class.

orgRemoveMember(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgRemoveMember(String, Class) instead and supply your own class to deserialize to.

orgRemoveMember(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgRemoveMember(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

orgRemoveMember(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgRemoveMember(String, Object, Class) instead and supply your own class to deserialize to.

orgRemoveMember(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgRemoveMember(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

orgRemoveMember(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the orgRemoveMember method with an empty input, deserializing to an object of the specified class.

orgRemoveMember(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the orgRemoveMember method with an empty input using the given environment, deserializing to an object of the specified class.

orgRemoveMember(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the orgRemoveMember method with the given input, deserializing to an object of the specified class.

orgRemoveMember(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the orgRemoveMember method with the given input using the given environment, deserializing to an object of the specified class.

orgSetMemberAccess(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgSetMemberAccess(String, Class) instead and supply your own class to deserialize to.

orgSetMemberAccess(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgSetMemberAccess(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

orgSetMemberAccess(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgSetMemberAccess(String, Object, Class) instead and supply your own class to deserialize to.

orgSetMemberAccess(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgSetMemberAccess(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

orgSetMemberAccess(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the orgSetMemberAccess method with an empty input, deserializing to an object of the specified class.

orgSetMemberAccess(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the orgSetMemberAccess method with an empty input using the given environment, deserializing to an object of the specified class.

orgSetMemberAccess(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the orgSetMemberAccess method with the given input, deserializing to an object of the specified class.

orgSetMemberAccess(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the orgSetMemberAccess method with the given input using the given environment, deserializing to an object of the specified class.

orgUpdate(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgUpdate(String, Class) instead and supply your own class to deserialize to.

orgUpdate(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgUpdate(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

orgUpdate(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgUpdate(String, Object, Class) instead and supply your own class to deserialize to.

orgUpdate(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.orgUpdate(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

orgUpdate(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the orgUpdate method with an empty input, deserializing to an object of the specified class.

orgUpdate(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the orgUpdate method with an empty input using the given environment, deserializing to an object of the specified class.

orgUpdate(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the orgUpdate method with the given input, deserializing to an object of the specified class.

orgUpdate(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the orgUpdate method with the given input using the given environment, deserializing to an object of the specified class.

originalInput - Variable in class com.dnanexus.DXExecution.DescribeResponseHash

output - Variable in class com.dnanexus.DXExecution.DescribeResponseHash

OutputParameter - Class in com.dnanexus

An output parameter for an executable.

OutputParameter.Builder - Class in com.dnanexus

Builder class for creating new output parameters.

P

parentAnalysis - Variable in class com.dnanexus.DXExecution.DescribeResponseHash

parentJob - Variable in class com.dnanexus.DXExecution.DescribeResponseHash

parseJson(String) - Static method in class com.dnanexus.DXJSON

Parses the specified string into a JSON object.

PARTIALLY_FAILED - com.dnanexus.AnalysisState

PermissionDeniedException - Exception in com.dnanexus.exceptions

The client has insufficient permissions to perform this action.

PermissionDeniedException(String, int) - Constructor for exception com.dnanexus.exceptions.PermissionDeniedException

Creates a PermissionDeniedException with the specified message and HTTP status code.

project - Variable in class com.dnanexus.DXDataObject.Builder

project - Variable in class com.dnanexus.DXExecution.DescribeResponseHash

projectAddTags(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectAddTags(String, Class) instead and supply your own class to deserialize to.

projectAddTags(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectAddTags(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectAddTags(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectAddTags(String, Object, Class) instead and supply your own class to deserialize to.

projectAddTags(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectAddTags(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectAddTags(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectAddTags method with an empty input, deserializing to an object of the specified class.

projectAddTags(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectAddTags method with an empty input using the given environment, deserializing to an object of the specified class.

projectAddTags(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectAddTags method with the given input, deserializing to an object of the specified class.

projectAddTags(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectAddTags method with the given input using the given environment, deserializing to an object of the specified class.

projectArchive(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectArchive(String, Class) instead and supply your own class to deserialize to.

projectArchive(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectArchive(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectArchive(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectArchive(String, Object, Class) instead and supply your own class to deserialize to.

projectArchive(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectArchive(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectArchive(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectArchive method with an empty input, deserializing to an object of the specified class.

projectArchive(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectArchive method with an empty input using the given environment, deserializing to an object of the specified class.

projectArchive(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectArchive method with the given input, deserializing to an object of the specified class.

projectArchive(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectArchive method with the given input using the given environment, deserializing to an object of the specified class.

projectClone(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectClone(String, Class) instead and supply your own class to deserialize to.

projectClone(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectClone(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectClone(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectClone(String, Object, Class) instead and supply your own class to deserialize to.

projectClone(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectClone(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectClone(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectClone method with an empty input, deserializing to an object of the specified class.

projectClone(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectClone method with an empty input using the given environment, deserializing to an object of the specified class.

projectClone(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectClone method with the given input, deserializing to an object of the specified class.

projectClone(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectClone method with the given input using the given environment, deserializing to an object of the specified class.

projectDecreasePermissions(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectDecreasePermissions(String, Class) instead and supply your own class to deserialize to.

projectDecreasePermissions(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectDecreasePermissions(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectDecreasePermissions(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectDecreasePermissions(String, Object, Class) instead and supply your own class to deserialize to.

projectDecreasePermissions(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectDecreasePermissions(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectDecreasePermissions(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectDecreasePermissions method with an empty input, deserializing to an object of the specified class.

projectDecreasePermissions(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectDecreasePermissions method with an empty input using the given environment, deserializing to an object of the specified class.

projectDecreasePermissions(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectDecreasePermissions method with the given input, deserializing to an object of the specified class.

projectDecreasePermissions(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectDecreasePermissions method with the given input using the given environment, deserializing to an object of the specified class.

projectDescribe(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectDescribe(String, Class) instead and supply your own class to deserialize to.

projectDescribe(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectDescribe(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectDescribe(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectDescribe(String, Object, Class) instead and supply your own class to deserialize to.

projectDescribe(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectDescribe(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectDescribe(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectDescribe method with an empty input, deserializing to an object of the specified class.

projectDescribe(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectDescribe method with an empty input using the given environment, deserializing to an object of the specified class.

projectDescribe(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectDescribe method with the given input, deserializing to an object of the specified class.

projectDescribe(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectDescribe method with the given input using the given environment, deserializing to an object of the specified class.

projectDestroy(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectDestroy(String, Class) instead and supply your own class to deserialize to.

projectDestroy(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectDestroy(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectDestroy(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectDestroy(String, Object, Class) instead and supply your own class to deserialize to.

projectDestroy(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectDestroy(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectDestroy(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectDestroy method with an empty input, deserializing to an object of the specified class.

projectDestroy(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectDestroy method with an empty input using the given environment, deserializing to an object of the specified class.

projectDestroy(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectDestroy method with the given input, deserializing to an object of the specified class.

projectDestroy(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectDestroy method with the given input using the given environment, deserializing to an object of the specified class.

projectInvite(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectInvite(String, Class) instead and supply your own class to deserialize to.

projectInvite(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectInvite(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectInvite(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectInvite(String, Object, Class) instead and supply your own class to deserialize to.

projectInvite(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectInvite(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectInvite(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectInvite method with an empty input, deserializing to an object of the specified class.

projectInvite(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectInvite method with an empty input using the given environment, deserializing to an object of the specified class.

projectInvite(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectInvite method with the given input, deserializing to an object of the specified class.

projectInvite(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectInvite method with the given input using the given environment, deserializing to an object of the specified class.

projectLeave(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectLeave(String, Class) instead and supply your own class to deserialize to.

projectLeave(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectLeave(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectLeave(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectLeave(String, Object, Class) instead and supply your own class to deserialize to.

projectLeave(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectLeave(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectLeave(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectLeave method with an empty input, deserializing to an object of the specified class.

projectLeave(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectLeave method with an empty input using the given environment, deserializing to an object of the specified class.

projectLeave(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectLeave method with the given input, deserializing to an object of the specified class.

projectLeave(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectLeave method with the given input using the given environment, deserializing to an object of the specified class.

projectListFolder(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectListFolder(String, Class) instead and supply your own class to deserialize to.

projectListFolder(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectListFolder(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectListFolder(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectListFolder(String, Object, Class) instead and supply your own class to deserialize to.

projectListFolder(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectListFolder(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectListFolder(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectListFolder method with an empty input, deserializing to an object of the specified class.

projectListFolder(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectListFolder method with an empty input using the given environment, deserializing to an object of the specified class.

projectListFolder(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectListFolder method with the given input, deserializing to an object of the specified class.

projectListFolder(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectListFolder method with the given input using the given environment, deserializing to an object of the specified class.

projectMove(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectMove(String, Class) instead and supply your own class to deserialize to.

projectMove(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectMove(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectMove(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectMove(String, Object, Class) instead and supply your own class to deserialize to.

projectMove(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectMove(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectMove(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectMove method with an empty input, deserializing to an object of the specified class.

projectMove(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectMove method with an empty input using the given environment, deserializing to an object of the specified class.

projectMove(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectMove method with the given input, deserializing to an object of the specified class.

projectMove(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectMove method with the given input using the given environment, deserializing to an object of the specified class.

projectNew() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectNew(Class) instead and supply your own class to deserialize to.

projectNew(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectNew(Class, DXEnvironment) instead and supply your own class to deserialize to.

projectNew(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectNew(Object, Class) instead and supply your own class to deserialize to.

projectNew(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectNew(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectNew(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectNew method with an empty input, deserializing to an object of the specified class.

projectNew(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectNew method with an empty input using the specified environment, deserializing to an object of the specified class.

projectNew(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectNew method with the specified input, deserializing to an object of the specified class.

projectNew(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectNew method with the specified input using the specified environment, deserializing to an object of the specified class.

projectNewFolder(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectNewFolder(String, Class) instead and supply your own class to deserialize to.

projectNewFolder(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectNewFolder(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectNewFolder(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectNewFolder(String, Object, Class) instead and supply your own class to deserialize to.

projectNewFolder(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectNewFolder(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectNewFolder(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectNewFolder method with an empty input, deserializing to an object of the specified class.

projectNewFolder(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectNewFolder method with an empty input using the given environment, deserializing to an object of the specified class.

projectNewFolder(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectNewFolder method with the given input, deserializing to an object of the specified class.

projectNewFolder(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectNewFolder method with the given input using the given environment, deserializing to an object of the specified class.

projectRemoveFolder(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectRemoveFolder(String, Class) instead and supply your own class to deserialize to.

projectRemoveFolder(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectRemoveFolder(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectRemoveFolder(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectRemoveFolder(String, Object, Class) instead and supply your own class to deserialize to.

projectRemoveFolder(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectRemoveFolder(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectRemoveFolder(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectRemoveFolder method with an empty input, deserializing to an object of the specified class.

projectRemoveFolder(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectRemoveFolder method with an empty input using the given environment, deserializing to an object of the specified class.

projectRemoveFolder(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectRemoveFolder method with the given input, deserializing to an object of the specified class.

projectRemoveFolder(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectRemoveFolder method with the given input using the given environment, deserializing to an object of the specified class.

projectRemoveObjects(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectRemoveObjects(String, Class) instead and supply your own class to deserialize to.

projectRemoveObjects(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectRemoveObjects(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectRemoveObjects(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectRemoveObjects(String, Object, Class) instead and supply your own class to deserialize to.

projectRemoveObjects(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectRemoveObjects(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectRemoveObjects(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectRemoveObjects method with an empty input, deserializing to an object of the specified class.

projectRemoveObjects(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectRemoveObjects method with an empty input using the given environment, deserializing to an object of the specified class.

projectRemoveObjects(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectRemoveObjects method with the given input, deserializing to an object of the specified class.

projectRemoveObjects(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectRemoveObjects method with the given input using the given environment, deserializing to an object of the specified class.

projectRemoveTags(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectRemoveTags(String, Class) instead and supply your own class to deserialize to.

projectRemoveTags(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectRemoveTags(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectRemoveTags(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectRemoveTags(String, Object, Class) instead and supply your own class to deserialize to.

projectRemoveTags(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectRemoveTags(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectRemoveTags(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectRemoveTags method with an empty input, deserializing to an object of the specified class.

projectRemoveTags(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectRemoveTags method with an empty input using the given environment, deserializing to an object of the specified class.

projectRemoveTags(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectRemoveTags method with the given input, deserializing to an object of the specified class.

projectRemoveTags(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectRemoveTags method with the given input using the given environment, deserializing to an object of the specified class.

projectRenameFolder(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectRenameFolder(String, Class) instead and supply your own class to deserialize to.

projectRenameFolder(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectRenameFolder(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectRenameFolder(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectRenameFolder(String, Object, Class) instead and supply your own class to deserialize to.

projectRenameFolder(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectRenameFolder(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectRenameFolder(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectRenameFolder method with an empty input, deserializing to an object of the specified class.

projectRenameFolder(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectRenameFolder method with an empty input using the given environment, deserializing to an object of the specified class.

projectRenameFolder(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectRenameFolder method with the given input, deserializing to an object of the specified class.

projectRenameFolder(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectRenameFolder method with the given input using the given environment, deserializing to an object of the specified class.

projectSetProperties(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectSetProperties(String, Class) instead and supply your own class to deserialize to.

projectSetProperties(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectSetProperties(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectSetProperties(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectSetProperties(String, Object, Class) instead and supply your own class to deserialize to.

projectSetProperties(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectSetProperties(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectSetProperties(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectSetProperties method with an empty input, deserializing to an object of the specified class.

projectSetProperties(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectSetProperties method with an empty input using the given environment, deserializing to an object of the specified class.

projectSetProperties(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectSetProperties method with the given input, deserializing to an object of the specified class.

projectSetProperties(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectSetProperties method with the given input using the given environment, deserializing to an object of the specified class.

projectTransfer(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectTransfer(String, Class) instead and supply your own class to deserialize to.

projectTransfer(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectTransfer(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectTransfer(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectTransfer(String, Object, Class) instead and supply your own class to deserialize to.

projectTransfer(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectTransfer(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectTransfer(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectTransfer method with an empty input, deserializing to an object of the specified class.

projectTransfer(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectTransfer method with an empty input using the given environment, deserializing to an object of the specified class.

projectTransfer(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectTransfer method with the given input, deserializing to an object of the specified class.

projectTransfer(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectTransfer method with the given input using the given environment, deserializing to an object of the specified class.

projectUnarchive(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectUnarchive(String, Class) instead and supply your own class to deserialize to.

projectUnarchive(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectUnarchive(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectUnarchive(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectUnarchive(String, Object, Class) instead and supply your own class to deserialize to.

projectUnarchive(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectUnarchive(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectUnarchive(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectUnarchive method with an empty input, deserializing to an object of the specified class.

projectUnarchive(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectUnarchive method with an empty input using the given environment, deserializing to an object of the specified class.

projectUnarchive(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectUnarchive method with the given input, deserializing to an object of the specified class.

projectUnarchive(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectUnarchive method with the given input using the given environment, deserializing to an object of the specified class.

projectUpdate(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectUpdate(String, Class) instead and supply your own class to deserialize to.

projectUpdate(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectUpdate(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectUpdate(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectUpdate(String, Object, Class) instead and supply your own class to deserialize to.

projectUpdate(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectUpdate(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectUpdate(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectUpdate method with an empty input, deserializing to an object of the specified class.

projectUpdate(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectUpdate method with an empty input using the given environment, deserializing to an object of the specified class.

projectUpdate(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectUpdate method with the given input, deserializing to an object of the specified class.

projectUpdate(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectUpdate method with the given input using the given environment, deserializing to an object of the specified class.

projectUpdateSponsorship(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectUpdateSponsorship(String, Class) instead and supply your own class to deserialize to.

projectUpdateSponsorship(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectUpdateSponsorship(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectUpdateSponsorship(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectUpdateSponsorship(String, Object, Class) instead and supply your own class to deserialize to.

projectUpdateSponsorship(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.projectUpdateSponsorship(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

projectUpdateSponsorship(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectUpdateSponsorship method with an empty input, deserializing to an object of the specified class.

projectUpdateSponsorship(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectUpdateSponsorship method with an empty input using the given environment, deserializing to an object of the specified class.

projectUpdateSponsorship(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the projectUpdateSponsorship method with the given input, deserializing to an object of the specified class.

projectUpdateSponsorship(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the projectUpdateSponsorship method with the given input using the given environment, deserializing to an object of the specified class.

properties - Variable in class com.dnanexus.DXDataObject.Builder

put(String, boolean) - Method in class com.dnanexus.DXJSON.ObjectBuilder

Adds a key-value pair with a boolean value and returns the resulting ObjectBuilder.

put(String, double) - Method in class com.dnanexus.DXJSON.ObjectBuilder

Adds a key-value pair with a numeric value and returns the resulting ObjectBuilder.

put(String, int) - Method in class com.dnanexus.DXJSON.ObjectBuilder

Adds a key-value pair with a numeric value and returns the resulting ObjectBuilder.

put(String, long) - Method in class com.dnanexus.DXJSON.ObjectBuilder

Adds a key-value pair with a numeric value and returns the resulting ObjectBuilder.

put(String, JsonNode) - Method in class com.dnanexus.DXJSON.ObjectBuilder

Adds a key-value pair with an arbitrary JsonNode value.

put(String, String) - Method in class com.dnanexus.DXJSON.ObjectBuilder

Adds a key-value pair with a string value and returns the resulting ObjectBuilder.

putAllProperties(Map<String, String>) - Method in class com.dnanexus.DXDataObject.Builder

Sets the specified properties on the newly created data object.

putAllProperties(Map<String, String>) - Method in class com.dnanexus.DXDataObject

Sets properties on the object.

putAllProperties(Map<String, String>) - Method in class com.dnanexus.ExecutableRunner

Sets the specified properties on the execution to be created.

putAllProperties(Map<String, String>, List<String>) - Method in class com.dnanexus.DXDataObject

Sets and removes properties on the object.

putProperty(String, String) - Method in class com.dnanexus.DXDataObject.Builder

Sets the specified property on the newly created data object.

putProperty(String, String) - Method in class com.dnanexus.DXDataObject

Sets a property on the object.

putProperty(String, String) - Method in class com.dnanexus.ExecutableRunner

Sets the specified property on the execution to be created.

R

RECORD - com.dnanexus.IOClass

recordAddTags(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordAddTags(String, Class) instead and supply your own class to deserialize to.

recordAddTags(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordAddTags(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordAddTags(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordAddTags(String, Object, Class) instead and supply your own class to deserialize to.

recordAddTags(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordAddTags(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordAddTags(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordAddTags method with an empty input, deserializing to an object of the specified class.

recordAddTags(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordAddTags method with an empty input using the given environment, deserializing to an object of the specified class.

recordAddTags(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordAddTags method with the given input, deserializing to an object of the specified class.

recordAddTags(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordAddTags method with the given input using the given environment, deserializing to an object of the specified class.

recordAddTypes(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordAddTypes(String, Class) instead and supply your own class to deserialize to.

recordAddTypes(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordAddTypes(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordAddTypes(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordAddTypes(String, Object, Class) instead and supply your own class to deserialize to.

recordAddTypes(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordAddTypes(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordAddTypes(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordAddTypes method with an empty input, deserializing to an object of the specified class.

recordAddTypes(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordAddTypes method with an empty input using the given environment, deserializing to an object of the specified class.

recordAddTypes(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordAddTypes method with the given input, deserializing to an object of the specified class.

recordAddTypes(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordAddTypes method with the given input using the given environment, deserializing to an object of the specified class.

recordClose(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordClose(String, Class) instead and supply your own class to deserialize to.

recordClose(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordClose(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordClose(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordClose(String, Object, Class) instead and supply your own class to deserialize to.

recordClose(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordClose(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordClose(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordClose method with an empty input, deserializing to an object of the specified class.

recordClose(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordClose method with an empty input using the given environment, deserializing to an object of the specified class.

recordClose(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordClose method with the given input, deserializing to an object of the specified class.

recordClose(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordClose method with the given input using the given environment, deserializing to an object of the specified class.

recordDescribe(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordDescribe(String, Class) instead and supply your own class to deserialize to.

recordDescribe(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordDescribe(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordDescribe(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordDescribe(String, Object, Class) instead and supply your own class to deserialize to.

recordDescribe(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordDescribe(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordDescribe(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordDescribe method with an empty input, deserializing to an object of the specified class.

recordDescribe(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordDescribe method with an empty input using the given environment, deserializing to an object of the specified class.

recordDescribe(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordDescribe method with the given input, deserializing to an object of the specified class.

recordDescribe(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordDescribe method with the given input using the given environment, deserializing to an object of the specified class.

recordGetDetails(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordGetDetails(String, Class) instead and supply your own class to deserialize to.

recordGetDetails(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordGetDetails(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordGetDetails(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordGetDetails(String, Object, Class) instead and supply your own class to deserialize to.

recordGetDetails(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordGetDetails(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordGetDetails(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordGetDetails method with an empty input, deserializing to an object of the specified class.

recordGetDetails(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordGetDetails method with an empty input using the given environment, deserializing to an object of the specified class.

recordGetDetails(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordGetDetails method with the given input, deserializing to an object of the specified class.

recordGetDetails(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordGetDetails method with the given input using the given environment, deserializing to an object of the specified class.

recordListProjects(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordListProjects(String, Class) instead and supply your own class to deserialize to.

recordListProjects(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordListProjects(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordListProjects(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordListProjects(String, Object, Class) instead and supply your own class to deserialize to.

recordListProjects(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordListProjects(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordListProjects(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordListProjects method with an empty input, deserializing to an object of the specified class.

recordListProjects(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordListProjects method with an empty input using the given environment, deserializing to an object of the specified class.

recordListProjects(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordListProjects method with the given input, deserializing to an object of the specified class.

recordListProjects(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordListProjects method with the given input using the given environment, deserializing to an object of the specified class.

recordNew() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordNew(Class) instead and supply your own class to deserialize to.

recordNew(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordNew(Class, DXEnvironment) instead and supply your own class to deserialize to.

recordNew(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordNew(Object, Class) instead and supply your own class to deserialize to.

recordNew(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordNew(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordNew(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordNew method with an empty input, deserializing to an object of the specified class.

recordNew(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordNew method with an empty input using the specified environment, deserializing to an object of the specified class.

recordNew(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordNew method with the specified input, deserializing to an object of the specified class.

recordNew(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordNew method with the specified input using the specified environment, deserializing to an object of the specified class.

recordRemoveTags(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordRemoveTags(String, Class) instead and supply your own class to deserialize to.

recordRemoveTags(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordRemoveTags(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordRemoveTags(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordRemoveTags(String, Object, Class) instead and supply your own class to deserialize to.

recordRemoveTags(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordRemoveTags(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordRemoveTags(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordRemoveTags method with an empty input, deserializing to an object of the specified class.

recordRemoveTags(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordRemoveTags method with an empty input using the given environment, deserializing to an object of the specified class.

recordRemoveTags(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordRemoveTags method with the given input, deserializing to an object of the specified class.

recordRemoveTags(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordRemoveTags method with the given input using the given environment, deserializing to an object of the specified class.

recordRemoveTypes(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordRemoveTypes(String, Class) instead and supply your own class to deserialize to.

recordRemoveTypes(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordRemoveTypes(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordRemoveTypes(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordRemoveTypes(String, Object, Class) instead and supply your own class to deserialize to.

recordRemoveTypes(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordRemoveTypes(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordRemoveTypes(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordRemoveTypes method with an empty input, deserializing to an object of the specified class.

recordRemoveTypes(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordRemoveTypes method with an empty input using the given environment, deserializing to an object of the specified class.

recordRemoveTypes(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordRemoveTypes method with the given input, deserializing to an object of the specified class.

recordRemoveTypes(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordRemoveTypes method with the given input using the given environment, deserializing to an object of the specified class.

recordRename(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordRename(String, Class) instead and supply your own class to deserialize to.

recordRename(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordRename(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordRename(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordRename(String, Object, Class) instead and supply your own class to deserialize to.

recordRename(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordRename(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordRename(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordRename method with an empty input, deserializing to an object of the specified class.

recordRename(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordRename method with an empty input using the given environment, deserializing to an object of the specified class.

recordRename(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordRename method with the given input, deserializing to an object of the specified class.

recordRename(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordRename method with the given input using the given environment, deserializing to an object of the specified class.

recordSetDetails(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordSetDetails(String, Class) instead and supply your own class to deserialize to.

recordSetDetails(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordSetDetails(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordSetDetails(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordSetDetails(String, Object, Class) instead and supply your own class to deserialize to.

recordSetDetails(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordSetDetails(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordSetDetails(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordSetDetails method with an empty input, deserializing to an object of the specified class.

recordSetDetails(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordSetDetails method with an empty input using the given environment, deserializing to an object of the specified class.

recordSetDetails(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordSetDetails method with the given input, deserializing to an object of the specified class.

recordSetDetails(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordSetDetails method with the given input using the given environment, deserializing to an object of the specified class.

recordSetProperties(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordSetProperties(String, Class) instead and supply your own class to deserialize to.

recordSetProperties(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordSetProperties(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordSetProperties(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordSetProperties(String, Object, Class) instead and supply your own class to deserialize to.

recordSetProperties(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordSetProperties(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordSetProperties(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordSetProperties method with an empty input, deserializing to an object of the specified class.

recordSetProperties(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordSetProperties method with an empty input using the given environment, deserializing to an object of the specified class.

recordSetProperties(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordSetProperties method with the given input, deserializing to an object of the specified class.

recordSetProperties(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordSetProperties method with the given input using the given environment, deserializing to an object of the specified class.

recordSetVisibility(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordSetVisibility(String, Class) instead and supply your own class to deserialize to.

recordSetVisibility(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordSetVisibility(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordSetVisibility(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordSetVisibility(String, Object, Class) instead and supply your own class to deserialize to.

recordSetVisibility(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.recordSetVisibility(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

recordSetVisibility(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordSetVisibility method with an empty input, deserializing to an object of the specified class.

recordSetVisibility(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordSetVisibility method with an empty input using the given environment, deserializing to an object of the specified class.

recordSetVisibility(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the recordSetVisibility method with the given input, deserializing to an object of the specified class.

recordSetVisibility(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the recordSetVisibility method with the given input using the given environment, deserializing to an object of the specified class.

removeFolder(String) - Method in class com.dnanexus.DXContainer

Removes the specified folder.

removeFolder(String, boolean) - Method in class com.dnanexus.DXContainer

Removes the specified folder, optionally removing all subfolders as well.

removeObjects(List<? extends DXDataObject>) - Method in class com.dnanexus.DXContainer

Removes the specified objects from the container.

removeProperty(String) - Method in class com.dnanexus.DXDataObject

Removes a property from the object.

removeTags(List<String>) - Method in class com.dnanexus.DXDataObject

Removes the specified tags from the object.

removeTypes(List<String>) - Method in class com.dnanexus.DXDataObject

Removes the specified types from the object.

rename(String) - Method in class com.dnanexus.DXDataObject

Changes the name of the object in its project.

renameFolder(String, String) - Method in class com.dnanexus.DXContainer

Renames the specified folder.

request(String, JsonNode) - Method in class com.dnanexus.DXHTTPRequest

Deprecated.

Use DXHTTPRequest.request(String, JsonNode, RetryStrategy) instead.

request(String, JsonNode, DXHTTPRequest.RetryStrategy) - Method in class com.dnanexus.DXHTTPRequest

Issues a request against the specified resource and returns the result as a JSON object.

request(String, String) - Method in class com.dnanexus.DXHTTPRequest

Deprecated.

Use DXHTTPRequest.request(String, String, RetryStrategy) instead.

request(String, String, DXHTTPRequest.RetryStrategy) - Method in class com.dnanexus.DXHTTPRequest

Issues a request against the specified resource and returns the result as a String.

ResourceNotFoundException - Exception in com.dnanexus.exceptions

A specified entity or resource could not be found.

ResourceNotFoundException(String, int) - Constructor for exception com.dnanexus.exceptions.ResourceNotFoundException

Creates a ResourceNotFoundException with the specified message and HTTP status code.

RESTARTABLE - com.dnanexus.JobState

rootExecution - Variable in class com.dnanexus.DXExecution.DescribeResponseHash

run() - Method in class com.dnanexus.ExecutableRunner

Runs the executable.

runInput - Variable in class com.dnanexus.DXExecution.DescribeResponseHash

RUNNABLE - com.dnanexus.JobState

RUNNING - com.dnanexus.JobState

RunSpecification - Class in com.dnanexus

A run specification for an applet.

RunSpecification.Builder - Class in com.dnanexus

Builder class for creating RunSpecifications.

S

SAFE_TO_RETRY - com.dnanexus.DXHTTPRequest.RetryStrategy

The request is idempotent and is safe to retry.

safeTreeToValue(JsonNode, Class<T>) - Static method in class com.dnanexus.DXJSON

Translates the given JSON object to an instance of the specified class.

ServiceUnavailableException - Exception in com.dnanexus.exceptions

Exception used to indicate that the request yielded 503 Service Unavailable and suggested that we retry at some point in the future.

ServiceUnavailableException(String, int) - Constructor for exception com.dnanexus.exceptions.ServiceUnavailableException

Creates a ServiceUnavailableException with the specified message and HTTP status code.

ServiceUnavailableException(String, int, int) - Constructor for exception com.dnanexus.exceptions.ServiceUnavailableException

setAllCopies(Boolean) - Method in class com.dnanexus.DXProject.ArchiveRequestBuilder

Sets flag to enforce the transition of files into ArchivalState.ARCHIVED state.

setApiserverHost(String) - Method in class com.dnanexus.DXEnvironment.Builder

Sets the API server hostname.

setApiserverPort(int) - Method in class com.dnanexus.DXEnvironment.Builder

Sets the API server port.

setApiserverProtocol(String) - Method in class com.dnanexus.DXEnvironment.Builder

Sets the API server protocol ("http" or "https").

setBearerToken(String) - Method in class com.dnanexus.DXEnvironment.Builder

Sets the token to use to authenticate to the Platform.

setConnectionTimeout(int) - Method in class com.dnanexus.DXEnvironment.Builder

Sets connection timeout of HTTP requests.

setDescription(String) - Method in class com.dnanexus.DXApplet.Builder

Sets the description of the applet to be created.

setDetails(Object) - Method in class com.dnanexus.DXDataObject.Builder

Sets the details of the data object to be created.

setDetails(Object) - Method in class com.dnanexus.DXDataObject

Sets the details of the object.

setDetails(Object) - Method in class com.dnanexus.ExecutableRunner

Sets the execution details to the JSON serialized value of the specified object.

setDryRun(Boolean) - Method in class com.dnanexus.DXProject.UnarchiveRequestBuilder

Sets dry-run mode.

setFolder(String) - Method in class com.dnanexus.DXDataObject.Builder

Sets the folder in which the data object will be created.

setFolder(String) - Method in class com.dnanexus.DXProject.ArchiveRequestBuilder

Sets folder for archival.

setFolder(String) - Method in class com.dnanexus.DXProject.UnarchiveRequestBuilder

Sets folder for unarchiving.

setFolder(String) - Method in class com.dnanexus.ExecutableRunner

Sets the folder in which the execution's outputs will be deposited.

setFolder(String, boolean) - Method in class com.dnanexus.DXDataObject.Builder

Sets the folder in which the data object will be created, optionally specifying that the folder and its parents should be created if necessary.

setFolder(String, Boolean) - Method in class com.dnanexus.DXProject.ArchiveRequestBuilder

Sets folder for archival.

setFolder(String, Boolean) - Method in class com.dnanexus.DXProject.UnarchiveRequestBuilder

Sets folder for unarchiving.

setHttpProxy(String) - Method in class com.dnanexus.DXEnvironment.Builder

Sets the HTTP proxy server

setInput(Object) - Method in class com.dnanexus.ExecutableRunner

Sets the input hash to the JSON serialized value of the specified object.

setInputSpecification(List<? extends InputParameter>) - Method in class com.dnanexus.DXApplet.Builder

Sets the input specification of the applet to be created.

setJob(DXJob) - Method in class com.dnanexus.DXEnvironment.Builder

Sets the current job to the specified job.

setMaxDefaultConnectionsPerRoute(int) - Method in class com.dnanexus.DXEnvironment.Builder

Sets maxDefaultConnectionsPerRoute for httpClient

setMediaType(String) - Method in class com.dnanexus.DXFile.Builder

Sets the Internet Media Type of the file to be created.

setName(String) - Method in class com.dnanexus.DXDataObject.Builder

Sets the name of the newly created data object.

setName(String) - Method in class com.dnanexus.DXProject.Builder

Sets the name of the new project.

setName(String) - Method in class com.dnanexus.ExecutableRunner

Sets the name of the resulting execution.

setOutputSpecification(List<? extends OutputParameter>) - Method in class com.dnanexus.DXApplet.Builder

Sets the output specification of the applet to be created.

setProject(DXContainer) - Method in class com.dnanexus.DXDataObject.Builder

Sets the project or container where the new data object will be created.

setProject(DXProject) - Method in class com.dnanexus.ExecutableRunner

Sets the project context of the resulting execution.

setProjectContext(DXProject) - Method in class com.dnanexus.DXEnvironment.Builder

Sets the project context to the specified project.

setRate(UnarchivingRate) - Method in class com.dnanexus.DXProject.UnarchiveRequestBuilder

Sets the speed at which the files in this request are unarchived.

setRawInput(JsonNode) - Method in class com.dnanexus.ExecutableRunner

Sets the input hash to the specified JSON node.

setRunSpecification(RunSpecification) - Method in class com.dnanexus.DXApplet.Builder

Sets the run specification of the applet to be created.

setSecurityContext(JsonNode) - Method in class com.dnanexus.DXEnvironment.Builder

Deprecated.

Use DXEnvironment.Builder.setBearerToken(String) instead.

setSocketTimeout(int) - Method in class com.dnanexus.DXEnvironment.Builder

Sets socket timeout of HTTP requests.

setSummary(String) - Method in class com.dnanexus.DXApplet.Builder

Sets the summary of the applet to be created.

setTitle(String) - Method in class com.dnanexus.DXApplet.Builder

Sets the title of the applet to be created.

setVisibility(boolean) - Method in class com.dnanexus.DXDataObject.Builder

Sets the visibility of the new data object.

setVisibility(boolean) - Method in class com.dnanexus.DXDataObject

Makes the object visible or hidden.

setWorkspace(DXContainer) - Method in class com.dnanexus.DXEnvironment.Builder

Sets the workspace to the specified container.

size() - Method in interface com.dnanexus.DXSearch.FindResultPage

Returns the number of results in the current page.

SpendingLimitExceededException - Exception in com.dnanexus.exceptions

The spending limit has been reached for the account that would be billed for this action.

SpendingLimitExceededException(String, int) - Constructor for exception com.dnanexus.exceptions.SpendingLimitExceededException

Creates a SpendingLimitExceededException with the specified message and HTTP status code.

stage - Variable in class com.dnanexus.DXExecution.DescribeResponseHash

STANDARD - com.dnanexus.UnarchivingRate

STRING - com.dnanexus.IOClass

systemDescribeDataObjects() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemDescribeDataObjects(Class) instead and supply your own class to deserialize to.

systemDescribeDataObjects(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemDescribeDataObjects(Class, DXEnvironment) instead and supply your own class to deserialize to.

systemDescribeDataObjects(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemDescribeDataObjects(Object, Class) instead and supply your own class to deserialize to.

systemDescribeDataObjects(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemDescribeDataObjects(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

systemDescribeDataObjects(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemDescribeDataObjects method with an empty input, deserializing to an object of the specified class.

systemDescribeDataObjects(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemDescribeDataObjects method with an empty input using the specified environment, deserializing to an object of the specified class.

systemDescribeDataObjects(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemDescribeDataObjects method with the specified input, deserializing to an object of the specified class.

systemDescribeDataObjects(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemDescribeDataObjects method with the specified input using the specified environment, deserializing to an object of the specified class.

systemDescribeExecutions() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemDescribeExecutions(Class) instead and supply your own class to deserialize to.

systemDescribeExecutions(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemDescribeExecutions(Class, DXEnvironment) instead and supply your own class to deserialize to.

systemDescribeExecutions(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemDescribeExecutions(Object, Class) instead and supply your own class to deserialize to.

systemDescribeExecutions(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemDescribeExecutions(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

systemDescribeExecutions(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemDescribeExecutions method with an empty input, deserializing to an object of the specified class.

systemDescribeExecutions(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemDescribeExecutions method with an empty input using the specified environment, deserializing to an object of the specified class.

systemDescribeExecutions(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemDescribeExecutions method with the specified input, deserializing to an object of the specified class.

systemDescribeExecutions(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemDescribeExecutions method with the specified input using the specified environment, deserializing to an object of the specified class.

systemDescribeProjects() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemDescribeProjects(Class) instead and supply your own class to deserialize to.

systemDescribeProjects(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemDescribeProjects(Class, DXEnvironment) instead and supply your own class to deserialize to.

systemDescribeProjects(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemDescribeProjects(Object, Class) instead and supply your own class to deserialize to.

systemDescribeProjects(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemDescribeProjects(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

systemDescribeProjects(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemDescribeProjects method with an empty input, deserializing to an object of the specified class.

systemDescribeProjects(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemDescribeProjects method with an empty input using the specified environment, deserializing to an object of the specified class.

systemDescribeProjects(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemDescribeProjects method with the specified input, deserializing to an object of the specified class.

systemDescribeProjects(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemDescribeProjects method with the specified input using the specified environment, deserializing to an object of the specified class.

systemFindAffiliates() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindAffiliates(Class) instead and supply your own class to deserialize to.

systemFindAffiliates(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindAffiliates(Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindAffiliates(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindAffiliates(Object, Class) instead and supply your own class to deserialize to.

systemFindAffiliates(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindAffiliates(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindAffiliates(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindAffiliates method with an empty input, deserializing to an object of the specified class.

systemFindAffiliates(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindAffiliates method with an empty input using the specified environment, deserializing to an object of the specified class.

systemFindAffiliates(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindAffiliates method with the specified input, deserializing to an object of the specified class.

systemFindAffiliates(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindAffiliates method with the specified input using the specified environment, deserializing to an object of the specified class.

systemFindAnalyses() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindAnalyses(Class) instead and supply your own class to deserialize to.

systemFindAnalyses(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindAnalyses(Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindAnalyses(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindAnalyses(Object, Class) instead and supply your own class to deserialize to.

systemFindAnalyses(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindAnalyses(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindAnalyses(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindAnalyses method with an empty input, deserializing to an object of the specified class.

systemFindAnalyses(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindAnalyses method with an empty input using the specified environment, deserializing to an object of the specified class.

systemFindAnalyses(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindAnalyses method with the specified input, deserializing to an object of the specified class.

systemFindAnalyses(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindAnalyses method with the specified input using the specified environment, deserializing to an object of the specified class.

systemFindApps() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindApps(Class) instead and supply your own class to deserialize to.

systemFindApps(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindApps(Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindApps(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindApps(Object, Class) instead and supply your own class to deserialize to.

systemFindApps(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindApps(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindApps(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindApps method with an empty input, deserializing to an object of the specified class.

systemFindApps(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindApps method with an empty input using the specified environment, deserializing to an object of the specified class.

systemFindApps(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindApps method with the specified input, deserializing to an object of the specified class.

systemFindApps(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindApps method with the specified input using the specified environment, deserializing to an object of the specified class.

systemFindDatabases() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindDatabases(Class) instead and supply your own class to deserialize to.

systemFindDatabases(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindDatabases(Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindDatabases(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindDatabases(Object, Class) instead and supply your own class to deserialize to.

systemFindDatabases(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindDatabases(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindDatabases(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindDatabases method with an empty input, deserializing to an object of the specified class.

systemFindDatabases(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindDatabases method with an empty input using the specified environment, deserializing to an object of the specified class.

systemFindDatabases(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindDatabases method with the specified input, deserializing to an object of the specified class.

systemFindDatabases(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindDatabases method with the specified input using the specified environment, deserializing to an object of the specified class.

systemFindDataObjects() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindDataObjects(Class) instead and supply your own class to deserialize to.

systemFindDataObjects(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindDataObjects(Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindDataObjects(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindDataObjects(Object, Class) instead and supply your own class to deserialize to.

systemFindDataObjects(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindDataObjects(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindDataObjects(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindDataObjects method with an empty input, deserializing to an object of the specified class.

systemFindDataObjects(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindDataObjects method with an empty input using the specified environment, deserializing to an object of the specified class.

systemFindDataObjects(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindDataObjects method with the specified input, deserializing to an object of the specified class.

systemFindDataObjects(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindDataObjects method with the specified input using the specified environment, deserializing to an object of the specified class.

systemFindExecutions() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindExecutions(Class) instead and supply your own class to deserialize to.

systemFindExecutions(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindExecutions(Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindExecutions(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindExecutions(Object, Class) instead and supply your own class to deserialize to.

systemFindExecutions(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindExecutions(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindExecutions(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindExecutions method with an empty input, deserializing to an object of the specified class.

systemFindExecutions(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindExecutions method with an empty input using the specified environment, deserializing to an object of the specified class.

systemFindExecutions(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindExecutions method with the specified input, deserializing to an object of the specified class.

systemFindExecutions(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindExecutions method with the specified input using the specified environment, deserializing to an object of the specified class.

systemFindGlobalWorkflows() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindGlobalWorkflows(Class) instead and supply your own class to deserialize to.

systemFindGlobalWorkflows(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindGlobalWorkflows(Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindGlobalWorkflows(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindGlobalWorkflows(Object, Class) instead and supply your own class to deserialize to.

systemFindGlobalWorkflows(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindGlobalWorkflows(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindGlobalWorkflows(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindGlobalWorkflows method with an empty input, deserializing to an object of the specified class.

systemFindGlobalWorkflows(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindGlobalWorkflows method with an empty input using the specified environment, deserializing to an object of the specified class.

systemFindGlobalWorkflows(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindGlobalWorkflows method with the specified input, deserializing to an object of the specified class.

systemFindGlobalWorkflows(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindGlobalWorkflows method with the specified input using the specified environment, deserializing to an object of the specified class.

systemFindJobs() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindJobs(Class) instead and supply your own class to deserialize to.

systemFindJobs(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindJobs(Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindJobs(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindJobs(Object, Class) instead and supply your own class to deserialize to.

systemFindJobs(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindJobs(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindJobs(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindJobs method with an empty input, deserializing to an object of the specified class.

systemFindJobs(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindJobs method with an empty input using the specified environment, deserializing to an object of the specified class.

systemFindJobs(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindJobs method with the specified input, deserializing to an object of the specified class.

systemFindJobs(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindJobs method with the specified input using the specified environment, deserializing to an object of the specified class.

systemFindOrgs() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindOrgs(Class) instead and supply your own class to deserialize to.

systemFindOrgs(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindOrgs(Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindOrgs(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindOrgs(Object, Class) instead and supply your own class to deserialize to.

systemFindOrgs(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindOrgs(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindOrgs(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindOrgs method with an empty input, deserializing to an object of the specified class.

systemFindOrgs(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindOrgs method with an empty input using the specified environment, deserializing to an object of the specified class.

systemFindOrgs(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindOrgs method with the specified input, deserializing to an object of the specified class.

systemFindOrgs(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindOrgs method with the specified input using the specified environment, deserializing to an object of the specified class.

systemFindProjectMembers() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindProjectMembers(Class) instead and supply your own class to deserialize to.

systemFindProjectMembers(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindProjectMembers(Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindProjectMembers(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindProjectMembers(Object, Class) instead and supply your own class to deserialize to.

systemFindProjectMembers(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindProjectMembers(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindProjectMembers(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindProjectMembers method with an empty input, deserializing to an object of the specified class.

systemFindProjectMembers(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindProjectMembers method with an empty input using the specified environment, deserializing to an object of the specified class.

systemFindProjectMembers(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindProjectMembers method with the specified input, deserializing to an object of the specified class.

systemFindProjectMembers(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindProjectMembers method with the specified input using the specified environment, deserializing to an object of the specified class.

systemFindProjects() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindProjects(Class) instead and supply your own class to deserialize to.

systemFindProjects(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindProjects(Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindProjects(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindProjects(Object, Class) instead and supply your own class to deserialize to.

systemFindProjects(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindProjects(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindProjects(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindProjects method with an empty input, deserializing to an object of the specified class.

systemFindProjects(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindProjects method with an empty input using the specified environment, deserializing to an object of the specified class.

systemFindProjects(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindProjects method with the specified input, deserializing to an object of the specified class.

systemFindProjects(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindProjects method with the specified input using the specified environment, deserializing to an object of the specified class.

systemFindUsers() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindUsers(Class) instead and supply your own class to deserialize to.

systemFindUsers(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindUsers(Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindUsers(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindUsers(Object, Class) instead and supply your own class to deserialize to.

systemFindUsers(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemFindUsers(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

systemFindUsers(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindUsers method with an empty input, deserializing to an object of the specified class.

systemFindUsers(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindUsers method with an empty input using the specified environment, deserializing to an object of the specified class.

systemFindUsers(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindUsers method with the specified input, deserializing to an object of the specified class.

systemFindUsers(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemFindUsers method with the specified input using the specified environment, deserializing to an object of the specified class.

systemGenerateBatchInputs() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemGenerateBatchInputs(Class) instead and supply your own class to deserialize to.

systemGenerateBatchInputs(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemGenerateBatchInputs(Class, DXEnvironment) instead and supply your own class to deserialize to.

systemGenerateBatchInputs(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemGenerateBatchInputs(Object, Class) instead and supply your own class to deserialize to.

systemGenerateBatchInputs(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemGenerateBatchInputs(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

systemGenerateBatchInputs(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemGenerateBatchInputs method with an empty input, deserializing to an object of the specified class.

systemGenerateBatchInputs(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemGenerateBatchInputs method with an empty input using the specified environment, deserializing to an object of the specified class.

systemGenerateBatchInputs(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemGenerateBatchInputs method with the specified input, deserializing to an object of the specified class.

systemGenerateBatchInputs(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemGenerateBatchInputs method with the specified input using the specified environment, deserializing to an object of the specified class.

systemGlobalSearch() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemGlobalSearch(Class) instead and supply your own class to deserialize to.

systemGlobalSearch(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemGlobalSearch(Class, DXEnvironment) instead and supply your own class to deserialize to.

systemGlobalSearch(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemGlobalSearch(Object, Class) instead and supply your own class to deserialize to.

systemGlobalSearch(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemGlobalSearch(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

systemGlobalSearch(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemGlobalSearch method with an empty input, deserializing to an object of the specified class.

systemGlobalSearch(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemGlobalSearch method with an empty input using the specified environment, deserializing to an object of the specified class.

systemGlobalSearch(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemGlobalSearch method with the specified input, deserializing to an object of the specified class.

systemGlobalSearch(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemGlobalSearch method with the specified input using the specified environment, deserializing to an object of the specified class.

systemGreet() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemGreet(Class) instead and supply your own class to deserialize to.

systemGreet(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemGreet(Class, DXEnvironment) instead and supply your own class to deserialize to.

systemGreet(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemGreet(Object, Class) instead and supply your own class to deserialize to.

systemGreet(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemGreet(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

systemGreet(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemGreet method with an empty input, deserializing to an object of the specified class.

systemGreet(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemGreet method with an empty input using the specified environment, deserializing to an object of the specified class.

systemGreet(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemGreet method with the specified input, deserializing to an object of the specified class.

systemGreet(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemGreet method with the specified input using the specified environment, deserializing to an object of the specified class.

systemHeaders() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemHeaders(Class) instead and supply your own class to deserialize to.

systemHeaders(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemHeaders(Class, DXEnvironment) instead and supply your own class to deserialize to.

systemHeaders(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemHeaders(Object, Class) instead and supply your own class to deserialize to.

systemHeaders(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemHeaders(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

systemHeaders(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemHeaders method with an empty input, deserializing to an object of the specified class.

systemHeaders(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemHeaders method with an empty input using the specified environment, deserializing to an object of the specified class.

systemHeaders(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemHeaders method with the specified input, deserializing to an object of the specified class.

systemHeaders(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemHeaders method with the specified input using the specified environment, deserializing to an object of the specified class.

systemResolveDataObjects() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemResolveDataObjects(Class) instead and supply your own class to deserialize to.

systemResolveDataObjects(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemResolveDataObjects(Class, DXEnvironment) instead and supply your own class to deserialize to.

systemResolveDataObjects(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemResolveDataObjects(Object, Class) instead and supply your own class to deserialize to.

systemResolveDataObjects(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemResolveDataObjects(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

systemResolveDataObjects(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemResolveDataObjects method with an empty input, deserializing to an object of the specified class.

systemResolveDataObjects(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemResolveDataObjects method with an empty input using the specified environment, deserializing to an object of the specified class.

systemResolveDataObjects(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemResolveDataObjects method with the specified input, deserializing to an object of the specified class.

systemResolveDataObjects(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemResolveDataObjects method with the specified input using the specified environment, deserializing to an object of the specified class.

systemShortenURL() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemShortenURL(Class) instead and supply your own class to deserialize to.

systemShortenURL(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemShortenURL(Class, DXEnvironment) instead and supply your own class to deserialize to.

systemShortenURL(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemShortenURL(Object, Class) instead and supply your own class to deserialize to.

systemShortenURL(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemShortenURL(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

systemShortenURL(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemShortenURL method with an empty input, deserializing to an object of the specified class.

systemShortenURL(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemShortenURL method with an empty input using the specified environment, deserializing to an object of the specified class.

systemShortenURL(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemShortenURL method with the specified input, deserializing to an object of the specified class.

systemShortenURL(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemShortenURL method with the specified input using the specified environment, deserializing to an object of the specified class.

systemWhoami() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemWhoami(Class) instead and supply your own class to deserialize to.

systemWhoami(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemWhoami(Class, DXEnvironment) instead and supply your own class to deserialize to.

systemWhoami(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemWhoami(Object, Class) instead and supply your own class to deserialize to.

systemWhoami(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.systemWhoami(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

systemWhoami(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemWhoami method with an empty input, deserializing to an object of the specified class.

systemWhoami(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemWhoami method with an empty input using the specified environment, deserializing to an object of the specified class.

systemWhoami(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the systemWhoami method with the specified input, deserializing to an object of the specified class.

systemWhoami(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the systemWhoami method with the specified input using the specified environment, deserializing to an object of the specified class.

T

tags - Variable in class com.dnanexus.DXDataObject.Builder

terminate() - Method in class com.dnanexus.DXAnalysis

terminate() - Method in class com.dnanexus.DXExecution

Terminates the execution.

terminate() - Method in class com.dnanexus.DXJob

TERMINATED - com.dnanexus.AnalysisState

TERMINATED - com.dnanexus.JobState

TERMINATING - com.dnanexus.AnalysisState

TERMINATING - com.dnanexus.JobState

toString() - Method in class com.dnanexus.DXObject

toString() - Method in exception com.dnanexus.exceptions.DXAPIException

toString() - Method in exception com.dnanexus.exceptions.InvalidAuthenticationException

toString() - Method in exception com.dnanexus.exceptions.InvalidInputException

toString() - Method in exception com.dnanexus.exceptions.InvalidStateException

toString() - Method in exception com.dnanexus.exceptions.InvalidTypeException

toString() - Method in exception com.dnanexus.exceptions.OrgExpiredException

toString() - Method in exception com.dnanexus.exceptions.PermissionDeniedException

toString() - Method in exception com.dnanexus.exceptions.ResourceNotFoundException

toString() - Method in exception com.dnanexus.exceptions.SpendingLimitExceededException

totalPrice - Variable in class com.dnanexus.DXExecution.DescribeResponseHash

types - Variable in class com.dnanexus.DXDataObject.Builder

U

unarchive() - Method in class com.dnanexus.DXProject

Request specified files or folder to be unarchived.

UnarchiveRequestBuilder() - Constructor for class com.dnanexus.DXProject.UnarchiveRequestBuilder

UnarchiveResults() - Constructor for class com.dnanexus.DXProject.UnarchiveResults

UNARCHIVING - com.dnanexus.ArchivalState

Unarchival requested on the current file.

UnarchivingRate - Enum in com.dnanexus

UNRESPONSIVE - com.dnanexus.JobState

UNSAFE_TO_RETRY - com.dnanexus.DXHTTPRequest.RetryStrategy

The request has non-idempotent side effects and is generally not safe to retry if the outcome of a previous request is unknown.

upload(byte[]) - Method in class com.dnanexus.DXFile.Builder

Uploads the data in the specified byte array to the file to be created.

upload(byte[]) - Method in class com.dnanexus.DXFile

Uploads data from the specified byte array to the file.

upload(InputStream) - Method in class com.dnanexus.DXFile.Builder

Uploads the data in the specified stream to the file to be created.

upload(InputStream) - Method in class com.dnanexus.DXFile

Uploads data from the specified stream to the file.

UPLOAD - com.dnanexus.AccessLevel

Allows the user to create new folders and data objects, modify the metadata of open objects, modify open GenomicTables and files, close data objects, and everything allowed by VIEW.

userDescribe(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.userDescribe(String, Class) instead and supply your own class to deserialize to.

userDescribe(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.userDescribe(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

userDescribe(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.userDescribe(String, Object, Class) instead and supply your own class to deserialize to.

userDescribe(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.userDescribe(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

userDescribe(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the userDescribe method with an empty input, deserializing to an object of the specified class.

userDescribe(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the userDescribe method with an empty input using the given environment, deserializing to an object of the specified class.

userDescribe(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the userDescribe method with the given input, deserializing to an object of the specified class.

userDescribe(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the userDescribe method with the given input using the given environment, deserializing to an object of the specified class.

userUpdate(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.userUpdate(String, Class) instead and supply your own class to deserialize to.

userUpdate(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.userUpdate(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

userUpdate(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.userUpdate(String, Object, Class) instead and supply your own class to deserialize to.

userUpdate(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.userUpdate(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

userUpdate(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the userUpdate method with an empty input, deserializing to an object of the specified class.

userUpdate(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the userUpdate method with an empty input using the given environment, deserializing to an object of the specified class.

userUpdate(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the userUpdate method with the given input, deserializing to an object of the specified class.

userUpdate(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the userUpdate method with the given input using the given environment, deserializing to an object of the specified class.

V

valueOf(String) - Static method in enum com.dnanexus.AccessLevel

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum com.dnanexus.AnalysisState

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum com.dnanexus.ArchivalState

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum com.dnanexus.DataObjectState

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum com.dnanexus.DXHTTPRequest.RetryStrategy

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum com.dnanexus.DXSearch.Ordering

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum com.dnanexus.DXSearch.VisibilityQuery

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum com.dnanexus.IOClass

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum com.dnanexus.JobState

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum com.dnanexus.UnarchivingRate

Returns the enum constant of this type with the specified name.

values() - Static method in enum com.dnanexus.AccessLevel

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum com.dnanexus.AnalysisState

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum com.dnanexus.ArchivalState

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum com.dnanexus.DataObjectState

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum com.dnanexus.DXHTTPRequest.RetryStrategy

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum com.dnanexus.DXSearch.Ordering

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum com.dnanexus.DXSearch.VisibilityQuery

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum com.dnanexus.IOClass

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum com.dnanexus.JobState

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum com.dnanexus.UnarchivingRate

Returns an array containing the constants of this enum type, in the order they are declared.

VIEW - com.dnanexus.AccessLevel

Allows read-only access to data objects and their metadata.

VISIBLE - com.dnanexus.DXSearch.VisibilityQuery

Search for only visible items.

W

WAITING_ON_INPUT - com.dnanexus.JobState

WAITING_ON_OUTPUT - com.dnanexus.JobState

waitUntilDone() - Method in class com.dnanexus.DXAnalysis

Waits until the analysis has successfully completed and is in the DONE state.

waitUntilDone() - Method in class com.dnanexus.DXExecution

Waits until the execution has successfully completed and is in the DONE state.

waitUntilDone() - Method in class com.dnanexus.DXJob

Waits until the job has successfully completed and is in the DONE state.

withArchivalState(ArchivalState) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns files with the specified archival state.

withClassAnalysis() - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only returns analyses (filters out jobs).

withClassApplet() - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns applets (filters out data objects of all other classes).

withClassFile() - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns files (filters out data objects of all other classes).

withClassJob() - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only returns jobs (filters out analyses).

withClassRecord() - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns records (filters out data objects of all other classes).

withClassWorkflow() - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns workflows (filters out data objects of all other classes).

withCustomFields(String...) - Method in class com.dnanexus.DXDataObject.DescribeOptions

Returns a DescribeOptions that behaves like the current one, except that only the specified fields will be included in the result.

withCustomFields(Collection<? extends String>) - Method in class com.dnanexus.DXDataObject.DescribeOptions

Returns a DescribeOptions that behaves like the current one, except that only the fields in the specified collection will be included in the result.

withDetails() - Method in class com.dnanexus.DXDataObject.DescribeOptions

Returns a DescribeOptions that behaves like the current one, except that the details field will be included in the result.

withDetails(Object) - Method in class com.dnanexus.ExecutableRunner

Deprecated.

Use ExecutableRunner.setDetails(Object) instead

withExecutable(DXExecutable<?>) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only return executions with the specified executable.

withIdsIn(Collection<? extends DXDataObject>) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns data objects whose IDs match one of the specified data objects.

withIdsIn(Collection<? extends DXExecution>) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only returns executions whose IDs match one of the specified executions.

withInput(Object) - Method in class com.dnanexus.ExecutableRunner

Deprecated.

Use ExecutableRunner.setInput(Object) instead

withKey(String) - Static method in class com.dnanexus.DXSearch.PropertiesQuery

A query that the specified property key is present.

withKeyAndBoolean(String, Boolean) - Static method in class com.dnanexus.DXSearch.PropertiesQuery

A query that the specified property key is present of not on the data object

withKeyAndMapValue(String, Map<String, String>) - Static method in class com.dnanexus.DXSearch.PropertiesQuery

A query that the specified property is defined by the mapping

withKeyAndValue(String, String) - Static method in class com.dnanexus.DXSearch.PropertiesQuery

A query that the specified property key has the specified property value.

withLinkTo(DXDataObject) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns data objects that link to the specified data object.

withMinimumAccessLevel(AccessLevel) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns data objects to which the requesting user has at least the specified level of permission in some project.

withName(String) - Method in class com.dnanexus.ExecutableRunner

Deprecated.

Use ExecutableRunner.setName(String) instead

withOriginJob(DXJob) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only return executions with the specified origin job.

withParentAnalysis(DXAnalysis) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only return executions with the specified parent analysis.

withParentJob(DXJob) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only return executions with the specified parent job.

withProperties() - Method in class com.dnanexus.DXDataObject.DescribeOptions

Returns a DescribeOptions that behaves like the current one, except that the properties field will be included in the result.

withProperties(DXSearch.PropertiesQuery) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns data objects matching the specified properties query.

withProperties(DXSearch.PropertiesQuery) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only returns executions matching the specified properties query.

withProperty(String) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns data objects where the specified property is present.

withProperty(String) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only returns executions where the specified property is present.

withProperty(String, Boolean) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns data objects where the specified property either exists or not.

withProperty(String, String) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns data objects where the specified property has the specified value.

withProperty(String, String) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only returns executions where the specified property has the specified value.

withProperty(String, Map<String, String>) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns data objects where the property key is not equal to the given value

withRawInput(JsonNode) - Method in class com.dnanexus.ExecutableRunner

Deprecated.

Use ExecutableRunner.setRawInput(JsonNode) instead

withRootExecution(DXExecution) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only return executions with the specified root execution.

withSortBy(String, DXSearch.Ordering) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Requests that the returned data objects are sorted by the specified field.

withState(AnalysisState...) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only returns executions in one of the specified analysis states.

withState(DataObjectState) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns data objects with the specified state.

withState(JobState...) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only returns executions in one of the specified job states.

withTag(String) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns data objects with the specified tag.

withTag(String) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only returns executions with the specified tag.

withTags(DXSearch.TagsQuery) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns data objects matching the specified tags query.

withTags(DXSearch.TagsQuery) - Method in class com.dnanexus.DXSearch.FindExecutionsRequestBuilder

Only returns executions matching the specified tags query.

withType(String) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns data objects with the specified type.

withTypes(DXSearch.TypeQuery) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns data objects matching the specified types query.

withVisibility(DXSearch.VisibilityQuery) - Method in class com.dnanexus.DXSearch.FindDataObjectsRequestBuilder

Only returns data objects with the specified visibility (visible or hidden).

WORKFLOW - com.dnanexus.IOClass

workflowAddStage(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowAddStage(String, Class) instead and supply your own class to deserialize to.

workflowAddStage(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowAddStage(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowAddStage(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowAddStage(String, Object, Class) instead and supply your own class to deserialize to.

workflowAddStage(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowAddStage(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowAddStage(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowAddStage method with an empty input, deserializing to an object of the specified class.

workflowAddStage(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowAddStage method with an empty input using the given environment, deserializing to an object of the specified class.

workflowAddStage(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowAddStage method with the given input, deserializing to an object of the specified class.

workflowAddStage(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowAddStage method with the given input using the given environment, deserializing to an object of the specified class.

workflowAddTags(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowAddTags(String, Class) instead and supply your own class to deserialize to.

workflowAddTags(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowAddTags(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowAddTags(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowAddTags(String, Object, Class) instead and supply your own class to deserialize to.

workflowAddTags(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowAddTags(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowAddTags(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowAddTags method with an empty input, deserializing to an object of the specified class.

workflowAddTags(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowAddTags method with an empty input using the given environment, deserializing to an object of the specified class.

workflowAddTags(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowAddTags method with the given input, deserializing to an object of the specified class.

workflowAddTags(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowAddTags method with the given input using the given environment, deserializing to an object of the specified class.

workflowAddTypes(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowAddTypes(String, Class) instead and supply your own class to deserialize to.

workflowAddTypes(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowAddTypes(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowAddTypes(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowAddTypes(String, Object, Class) instead and supply your own class to deserialize to.

workflowAddTypes(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowAddTypes(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowAddTypes(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowAddTypes method with an empty input, deserializing to an object of the specified class.

workflowAddTypes(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowAddTypes method with an empty input using the given environment, deserializing to an object of the specified class.

workflowAddTypes(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowAddTypes method with the given input, deserializing to an object of the specified class.

workflowAddTypes(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowAddTypes method with the given input using the given environment, deserializing to an object of the specified class.

workflowClose(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowClose(String, Class) instead and supply your own class to deserialize to.

workflowClose(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowClose(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowClose(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowClose(String, Object, Class) instead and supply your own class to deserialize to.

workflowClose(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowClose(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowClose(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowClose method with an empty input, deserializing to an object of the specified class.

workflowClose(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowClose method with an empty input using the given environment, deserializing to an object of the specified class.

workflowClose(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowClose method with the given input, deserializing to an object of the specified class.

workflowClose(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowClose method with the given input using the given environment, deserializing to an object of the specified class.

workflowDescribe(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowDescribe(String, Class) instead and supply your own class to deserialize to.

workflowDescribe(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowDescribe(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowDescribe(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowDescribe(String, Object, Class) instead and supply your own class to deserialize to.

workflowDescribe(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowDescribe(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowDescribe(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowDescribe method with an empty input, deserializing to an object of the specified class.

workflowDescribe(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowDescribe method with an empty input using the given environment, deserializing to an object of the specified class.

workflowDescribe(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowDescribe method with the given input, deserializing to an object of the specified class.

workflowDescribe(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowDescribe method with the given input using the given environment, deserializing to an object of the specified class.

workflowDryRun(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowDryRun(String, Class) instead and supply your own class to deserialize to.

workflowDryRun(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowDryRun(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowDryRun(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowDryRun(String, Object, Class) instead and supply your own class to deserialize to.

workflowDryRun(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowDryRun(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowDryRun(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowDryRun method with an empty input, deserializing to an object of the specified class.

workflowDryRun(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowDryRun method with an empty input using the given environment, deserializing to an object of the specified class.

workflowDryRun(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowDryRun method with the given input, deserializing to an object of the specified class.

workflowDryRun(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowDryRun method with the given input using the given environment, deserializing to an object of the specified class.

workflowGetDetails(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowGetDetails(String, Class) instead and supply your own class to deserialize to.

workflowGetDetails(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowGetDetails(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowGetDetails(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowGetDetails(String, Object, Class) instead and supply your own class to deserialize to.

workflowGetDetails(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowGetDetails(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowGetDetails(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowGetDetails method with an empty input, deserializing to an object of the specified class.

workflowGetDetails(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowGetDetails method with an empty input using the given environment, deserializing to an object of the specified class.

workflowGetDetails(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowGetDetails method with the given input, deserializing to an object of the specified class.

workflowGetDetails(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowGetDetails method with the given input using the given environment, deserializing to an object of the specified class.

workflowIsStageCompatible(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowIsStageCompatible(String, Class) instead and supply your own class to deserialize to.

workflowIsStageCompatible(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowIsStageCompatible(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowIsStageCompatible(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowIsStageCompatible(String, Object, Class) instead and supply your own class to deserialize to.

workflowIsStageCompatible(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowIsStageCompatible(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowIsStageCompatible(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowIsStageCompatible method with an empty input, deserializing to an object of the specified class.

workflowIsStageCompatible(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowIsStageCompatible method with an empty input using the given environment, deserializing to an object of the specified class.

workflowIsStageCompatible(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowIsStageCompatible method with the given input, deserializing to an object of the specified class.

workflowIsStageCompatible(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowIsStageCompatible method with the given input using the given environment, deserializing to an object of the specified class.

workflowListProjects(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowListProjects(String, Class) instead and supply your own class to deserialize to.

workflowListProjects(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowListProjects(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowListProjects(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowListProjects(String, Object, Class) instead and supply your own class to deserialize to.

workflowListProjects(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowListProjects(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowListProjects(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowListProjects method with an empty input, deserializing to an object of the specified class.

workflowListProjects(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowListProjects method with an empty input using the given environment, deserializing to an object of the specified class.

workflowListProjects(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowListProjects method with the given input, deserializing to an object of the specified class.

workflowListProjects(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowListProjects method with the given input using the given environment, deserializing to an object of the specified class.

workflowMoveStage(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowMoveStage(String, Class) instead and supply your own class to deserialize to.

workflowMoveStage(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowMoveStage(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowMoveStage(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowMoveStage(String, Object, Class) instead and supply your own class to deserialize to.

workflowMoveStage(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowMoveStage(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowMoveStage(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowMoveStage method with an empty input, deserializing to an object of the specified class.

workflowMoveStage(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowMoveStage method with an empty input using the given environment, deserializing to an object of the specified class.

workflowMoveStage(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowMoveStage method with the given input, deserializing to an object of the specified class.

workflowMoveStage(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowMoveStage method with the given input using the given environment, deserializing to an object of the specified class.

workflowNew() - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowNew(Class) instead and supply your own class to deserialize to.

workflowNew(DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowNew(Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowNew(JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowNew(Object, Class) instead and supply your own class to deserialize to.

workflowNew(JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowNew(Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowNew(Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowNew method with an empty input, deserializing to an object of the specified class.

workflowNew(Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowNew method with an empty input using the specified environment, deserializing to an object of the specified class.

workflowNew(Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowNew method with the specified input, deserializing to an object of the specified class.

workflowNew(Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowNew method with the specified input using the specified environment, deserializing to an object of the specified class.

workflowOverwrite(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowOverwrite(String, Class) instead and supply your own class to deserialize to.

workflowOverwrite(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowOverwrite(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowOverwrite(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowOverwrite(String, Object, Class) instead and supply your own class to deserialize to.

workflowOverwrite(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowOverwrite(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowOverwrite(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowOverwrite method with an empty input, deserializing to an object of the specified class.

workflowOverwrite(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowOverwrite method with an empty input using the given environment, deserializing to an object of the specified class.

workflowOverwrite(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowOverwrite method with the given input, deserializing to an object of the specified class.

workflowOverwrite(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowOverwrite method with the given input using the given environment, deserializing to an object of the specified class.

workflowRemoveStage(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowRemoveStage(String, Class) instead and supply your own class to deserialize to.

workflowRemoveStage(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowRemoveStage(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowRemoveStage(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowRemoveStage(String, Object, Class) instead and supply your own class to deserialize to.

workflowRemoveStage(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowRemoveStage(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowRemoveStage(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowRemoveStage method with an empty input, deserializing to an object of the specified class.

workflowRemoveStage(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowRemoveStage method with an empty input using the given environment, deserializing to an object of the specified class.

workflowRemoveStage(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowRemoveStage method with the given input, deserializing to an object of the specified class.

workflowRemoveStage(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowRemoveStage method with the given input using the given environment, deserializing to an object of the specified class.

workflowRemoveTags(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowRemoveTags(String, Class) instead and supply your own class to deserialize to.

workflowRemoveTags(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowRemoveTags(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowRemoveTags(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowRemoveTags(String, Object, Class) instead and supply your own class to deserialize to.

workflowRemoveTags(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowRemoveTags(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowRemoveTags(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowRemoveTags method with an empty input, deserializing to an object of the specified class.

workflowRemoveTags(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowRemoveTags method with an empty input using the given environment, deserializing to an object of the specified class.

workflowRemoveTags(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowRemoveTags method with the given input, deserializing to an object of the specified class.

workflowRemoveTags(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowRemoveTags method with the given input using the given environment, deserializing to an object of the specified class.

workflowRemoveTypes(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowRemoveTypes(String, Class) instead and supply your own class to deserialize to.

workflowRemoveTypes(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowRemoveTypes(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowRemoveTypes(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowRemoveTypes(String, Object, Class) instead and supply your own class to deserialize to.

workflowRemoveTypes(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowRemoveTypes(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowRemoveTypes(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowRemoveTypes method with an empty input, deserializing to an object of the specified class.

workflowRemoveTypes(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowRemoveTypes method with an empty input using the given environment, deserializing to an object of the specified class.

workflowRemoveTypes(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowRemoveTypes method with the given input, deserializing to an object of the specified class.

workflowRemoveTypes(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowRemoveTypes method with the given input using the given environment, deserializing to an object of the specified class.

workflowRename(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowRename(String, Class) instead and supply your own class to deserialize to.

workflowRename(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowRename(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowRename(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowRename(String, Object, Class) instead and supply your own class to deserialize to.

workflowRename(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowRename(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowRename(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowRename method with an empty input, deserializing to an object of the specified class.

workflowRename(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowRename method with an empty input using the given environment, deserializing to an object of the specified class.

workflowRename(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowRename method with the given input, deserializing to an object of the specified class.

workflowRename(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowRename method with the given input using the given environment, deserializing to an object of the specified class.

workflowRun(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowRun(String, Class) instead and supply your own class to deserialize to.

workflowRun(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowRun(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowRun(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowRun(String, Object, Class) instead and supply your own class to deserialize to.

workflowRun(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowRun(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowRun(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowRun method with an empty input, deserializing to an object of the specified class.

workflowRun(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowRun method with an empty input using the given environment, deserializing to an object of the specified class.

workflowRun(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowRun method with the given input, deserializing to an object of the specified class.

workflowRun(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowRun method with the given input using the given environment, deserializing to an object of the specified class.

workflowSetDetails(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowSetDetails(String, Class) instead and supply your own class to deserialize to.

workflowSetDetails(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowSetDetails(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowSetDetails(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowSetDetails(String, Object, Class) instead and supply your own class to deserialize to.

workflowSetDetails(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowSetDetails(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowSetDetails(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowSetDetails method with an empty input, deserializing to an object of the specified class.

workflowSetDetails(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowSetDetails method with an empty input using the given environment, deserializing to an object of the specified class.

workflowSetDetails(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowSetDetails method with the given input, deserializing to an object of the specified class.

workflowSetDetails(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowSetDetails method with the given input using the given environment, deserializing to an object of the specified class.

workflowSetProperties(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowSetProperties(String, Class) instead and supply your own class to deserialize to.

workflowSetProperties(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowSetProperties(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowSetProperties(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowSetProperties(String, Object, Class) instead and supply your own class to deserialize to.

workflowSetProperties(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowSetProperties(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowSetProperties(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowSetProperties method with an empty input, deserializing to an object of the specified class.

workflowSetProperties(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowSetProperties method with an empty input using the given environment, deserializing to an object of the specified class.

workflowSetProperties(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowSetProperties method with the given input, deserializing to an object of the specified class.

workflowSetProperties(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowSetProperties method with the given input using the given environment, deserializing to an object of the specified class.

workflowSetVisibility(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowSetVisibility(String, Class) instead and supply your own class to deserialize to.

workflowSetVisibility(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowSetVisibility(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowSetVisibility(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowSetVisibility(String, Object, Class) instead and supply your own class to deserialize to.

workflowSetVisibility(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowSetVisibility(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowSetVisibility(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowSetVisibility method with an empty input, deserializing to an object of the specified class.

workflowSetVisibility(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowSetVisibility method with an empty input using the given environment, deserializing to an object of the specified class.

workflowSetVisibility(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowSetVisibility method with the given input, deserializing to an object of the specified class.

workflowSetVisibility(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowSetVisibility method with the given input using the given environment, deserializing to an object of the specified class.

workflowUpdate(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowUpdate(String, Class) instead and supply your own class to deserialize to.

workflowUpdate(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowUpdate(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowUpdate(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowUpdate(String, Object, Class) instead and supply your own class to deserialize to.

workflowUpdate(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowUpdate(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowUpdate(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowUpdate method with an empty input, deserializing to an object of the specified class.

workflowUpdate(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowUpdate method with an empty input using the given environment, deserializing to an object of the specified class.

workflowUpdate(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowUpdate method with the given input, deserializing to an object of the specified class.

workflowUpdate(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowUpdate method with the given input using the given environment, deserializing to an object of the specified class.

workflowUpdateStageExecutable(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowUpdateStageExecutable(String, Class) instead and supply your own class to deserialize to.

workflowUpdateStageExecutable(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowUpdateStageExecutable(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowUpdateStageExecutable(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowUpdateStageExecutable(String, Object, Class) instead and supply your own class to deserialize to.

workflowUpdateStageExecutable(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowUpdateStageExecutable(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowUpdateStageExecutable(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowUpdateStageExecutable method with an empty input, deserializing to an object of the specified class.

workflowUpdateStageExecutable(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowUpdateStageExecutable method with an empty input using the given environment, deserializing to an object of the specified class.

workflowUpdateStageExecutable(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowUpdateStageExecutable method with the given input, deserializing to an object of the specified class.

workflowUpdateStageExecutable(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowUpdateStageExecutable method with the given input using the given environment, deserializing to an object of the specified class.

workflowValidateBatch(String) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowValidateBatch(String, Class) instead and supply your own class to deserialize to.

workflowValidateBatch(String, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowValidateBatch(String, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowValidateBatch(String, JsonNode) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowValidateBatch(String, Object, Class) instead and supply your own class to deserialize to.

workflowValidateBatch(String, JsonNode, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Deprecated.

Use DXAPI.workflowValidateBatch(String, Object, Class, DXEnvironment) instead and supply your own class to deserialize to.

workflowValidateBatch(String, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowValidateBatch method with an empty input, deserializing to an object of the specified class.

workflowValidateBatch(String, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowValidateBatch method with an empty input using the given environment, deserializing to an object of the specified class.

workflowValidateBatch(String, Object, Class<T>) - Static method in class com.dnanexus.DXAPI

Invokes the workflowValidateBatch method with the given input, deserializing to an object of the specified class.

workflowValidateBatch(String, Object, Class<T>, DXEnvironment) - Static method in class com.dnanexus.DXAPI

Invokes the workflowValidateBatch method with the given input using the given environment, deserializing to an object of the specified class.

workspace - Variable in class com.dnanexus.DXExecution.DescribeResponseHash

writeJobOutput(Object) - Static method in class com.dnanexus.DXUtil

Writes the job output.

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